Detail information of GWHGAAEX007361/evm.TU.scaffold_2.180


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|218884126|ref|YP_002428508.1|7.00E-59C/D box methylation guide ribonucleoprotein complex aNOP56 subunit [Desulfurococcus kamchatkensis 1221n]
KOGKOG25730Ribosome biogenesis protein - Nop56p/Sik1p
nrgi|743785261|ref|XP_010921864.1|0PREDICTED: nucleolar protein 56-like [Elaeis guineensis]
Swissprottr|O04658|NOP5A_ARATH9.00E-114Probable nucleolar protein 5-1
trEMBLtr|M0SWQ0|M0SWQ0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P08210_001}
TAIRAT1G561100homolog of nucleolar protein NOP56

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001081900518195287+
Transcript Sequence

Network for GWHGAAEX007361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08156.12NOP5NT4715.70E-17
PF01798.17Nop1794119.70E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14564NOP56 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms168.050
SRR2545915Juvenile tuber184.000
SRP108465SRR5643513five period of Gastrodia elata145.870
SRR5643514five period of Gastrodia elata142.700
SRR5643515five period of Gastrodia elata124.950
SRR5643524five period of Gastrodia elata122.750
SRR5643525five period of Gastrodia elata97.860
SRR5643528five period of Gastrodia elata90.940
SRR5643658five period of Gastrodia elata129.460
SRR5643659five period of Gastrodia elata193.760
SRR5643660five period of Gastrodia elata202.820
SRR5643661five period of Gastrodia elata197.870
SRR5643662five period of Gastrodia elata165.670
SRR5643663five period of Gastrodia elata169.660
SRR5643664five period of Gastrodia elata183.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1156.230
SRR6049655Rhizomagastrodiae_C368-T10_good_1217.010
SRR6049656Rhizomagastrodiae_C368-T07_good_1161.400
SRR6049657Rhizomagastrodiae_C368-T07_good_1168.300
SRR6049658Rhizomagastrodiae_C368-T04_good_1150.970
SRR6049659Rhizomagastrodiae_C368-T04_good_1157.190
SRR6049660Rhizomagastrodiae_C368-T01_good_1170.000
SRR6049661Rhizomagastrodiae_C368-T04_good_1159.610
SRR6049662Rhizomagastrodiae_C368-T01_good_1165.860
SRR6049663Rhizomagastrodiae_C368-T01_good_1172.090
SRR6049664Rhizomagastrodiae_C368-T10_good_1173.600
SRR6049665Rhizomagastrodiae_C368-T10_good_1173.600
SRP279888GastroGastrodia elata tuber 165.54
JuvenJuvenile tuber244.16
Mother_GastroMother tuber of Gastrodia elata 54.74
Mother_JuvenMother tuber of Juvenile 98.85