Detail information of GWHGAAEX007370/evm.TU.scaffold_2.194


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|397779935|ref|YP_006544408.1|4.00E-21Ribosome maturation protein SDO1 [Methanoculleus bourgensis MS2]
KOGKOG29171.00E-134Predicted exosome subunit
nrgi|672170251|ref|XP_008805180.1|0PREDICTED: ribosome maturation protein SBDS [Phoenix dactylifera]
trEMBLtr|A0A067L741|A0A067L741_JATCU9.00E-180Uncharacterized protein {ECO:0000313|EMBL:KDP43068.1}
TAIRAT1G43860_11.00E-134Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001086712798694387-
Transcript Sequence

Network for GWHGAAEX007370

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01172.17SBDS161023.00E-29
PF09377.9SBDS_C1102256.50E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14574SDO1, SBDS Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0042256Biological Processmature ribosome assembly
GO:0042254Biological Processribosome biogenesis

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.800
SRR2545915Juvenile tuber29.970
SRP108465SRR5643513five period of Gastrodia elata27.970
SRR5643514five period of Gastrodia elata27.640
SRR5643515five period of Gastrodia elata27.750
SRR5643524five period of Gastrodia elata30.820
SRR5643525five period of Gastrodia elata33.720
SRR5643528five period of Gastrodia elata29.100
SRR5643658five period of Gastrodia elata28.540
SRR5643659five period of Gastrodia elata31.450
SRR5643660five period of Gastrodia elata32.460
SRR5643661five period of Gastrodia elata28.800
SRR5643662five period of Gastrodia elata27.890
SRR5643663five period of Gastrodia elata28.990
SRR5643664five period of Gastrodia elata26.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.300
SRR6049655Rhizomagastrodiae_C368-T10_good_120.790
SRR6049656Rhizomagastrodiae_C368-T07_good_121.500
SRR6049657Rhizomagastrodiae_C368-T07_good_126.060
SRR6049658Rhizomagastrodiae_C368-T04_good_122.470
SRR6049659Rhizomagastrodiae_C368-T04_good_125.850
SRR6049660Rhizomagastrodiae_C368-T01_good_123.870
SRR6049661Rhizomagastrodiae_C368-T04_good_123.420
SRR6049662Rhizomagastrodiae_C368-T01_good_125.810
SRR6049663Rhizomagastrodiae_C368-T01_good_125.640
SRR6049664Rhizomagastrodiae_C368-T10_good_125.950
SRR6049665Rhizomagastrodiae_C368-T10_good_125.950
SRP279888GastroGastrodia elata tuber 35.46
JuvenJuvenile tuber44.00
Mother_GastroMother tuber of Gastrodia elata 42.77
Mother_JuvenMother tuber of Juvenile 47.53