Detail information of GWHGAAEX007372/evm.TU.scaffold_2.197
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681693|ref|YP_001864889.1| | 2.00E-28 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| KOG | KOG1274 | 0 | WD40 repeat protein |
| nr | gi|672153449|ref|XP_008797576.1| | 0 | PREDICTED: WD repeat and HMG-box DNA-binding protein 1 [Phoenix dactylifera] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 1.00E-18 | Protein Mut11 |
| trEMBL | tr|M0S167|M0S167_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P19090_001} |
| TAIR | AT3G42660 | 0 | transducin family protein / WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 8895134 | 8902213 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007372
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 55 | 88 | 0.0002 |
| PF00400.31 | WD40 | 138 | 162 | 0.065 |
| PF00400.31 | WD40 | 178 | 222 | 0.062 |
| PF00400.31 | WD40 | 228 | 265 | 5.10E-06 |
| PF12341.7 | Mcl1_mid | 424 | 708 | 1.10E-89 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.250 |
| SRR2545915 | Juvenile tuber | 1.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.190 |
| SRR5643514 | five period of Gastrodia elata | 4.700 | |
| SRR5643515 | five period of Gastrodia elata | 2.740 | |
| SRR5643524 | five period of Gastrodia elata | 4.890 | |
| SRR5643525 | five period of Gastrodia elata | 0.410 | |
| SRR5643528 | five period of Gastrodia elata | 0.110 | |
| SRR5643658 | five period of Gastrodia elata | 0.330 | |
| SRR5643659 | five period of Gastrodia elata | 3.430 | |
| SRR5643660 | five period of Gastrodia elata | 3.690 | |
| SRR5643661 | five period of Gastrodia elata | 2.380 | |
| SRR5643662 | five period of Gastrodia elata | 1.470 | |
| SRR5643663 | five period of Gastrodia elata | 2.900 | |
| SRR5643664 | five period of Gastrodia elata | 0.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.08 |
| Juven | Juvenile tuber | 2.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.30 | |
| Mother_Juven | Mother tuber of Juvenile | 0.28 |