Detail information of GWHGAAEX007373/evm.TU.scaffold_2.198
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 1.00E-52 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|743822674|ref|XP_010932335.1| | 3.21E-109 | PREDICTED: probable pectinesterase/pectinesterase inhibitor 25 [Elaeis guineensis] |
| Swissprot | tr|Q8RXK7|PME41_ARATH | 6.00E-98 | Pectinesterase 41 (Precursor) |
| trEMBL | tr|I1JQN7|I1JQN7_SOYBN | 2.00E-104 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT4G02330 | 2.00E-97 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 8913848 | 8916830 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007373
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01095.18 | Pectinesterase | 95 | 393 | 5.80E-112 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.100 |
| SRR5643514 | five period of Gastrodia elata | 9.000 | |
| SRR5643515 | five period of Gastrodia elata | 3.990 | |
| SRR5643524 | five period of Gastrodia elata | 7.610 | |
| SRR5643525 | five period of Gastrodia elata | 0.040 | |
| SRR5643528 | five period of Gastrodia elata | 0.090 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.040 | |
| SRR5643661 | five period of Gastrodia elata | 0.040 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.030 | |
| SRR5643664 | five period of Gastrodia elata | 0.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.03 |
| Juven | Juvenile tuber | 0.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.43 | |
| Mother_Juven | Mother tuber of Juvenile | 0.74 |