Detail information of GWHGAAEX007374/evm.TU.scaffold_2.200
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|166366485|ref|YP_001658758.1| | 2.00E-20 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| KOG | KOG1274 | 1.00E-107 | WD40 repeat protein |
| nr | gi|672153449|ref|XP_008797576.1| | 1.13E-155 | PREDICTED: WD repeat and HMG-box DNA-binding protein 1 [Phoenix dactylifera] |
| Swissprot | tr|Q8H0T9|KTNB1_ARATH | 1.00E-10 | Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022} |
| trEMBL | tr|M0S167|M0S167_MUSAM | 1.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P19090_001} |
| TAIR | AT3G42660 | 1.00E-107 | transducin family protein / WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 8941548 | 8943410 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007374
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 99 | 143 | 0.001 |
| PF00400.31 | WD40 | 149 | 186 | 1.60E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |