Gene detail

Detail information of GWHGAAEX007378/evm.TU.scaffold_2.203

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|271966022\|ref\|YP_003340218.1\|	7.00E-17	hypothetical protein [Streptosporangium roseum DSM 43021]
KOG	KOG4378	0	Nuclear protein COP1
nr	gi\|672114601\|ref\|XP_008777699.1\|	0	PREDICTED: protein NEDD1 [Phoenix dactylifera]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	6.00E-10	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|M0RLM6\|M0RLM6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P26520_001}
TAIR	AT5G05970	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	9099903	9136261	+

Transcript Sequence
>GWHTAAEX007378 AAAAGGTAAATATTTTAAAAATAAATAATAAAAATTTCTGGGTACATGGGTTAATAAAAGCTTACAAAATTATTCCTAGTAAACAAAGATAAATTCTTGCATCCTCTCACTAACAAACAACATTCCGAAAATCTCATTTGGTATACATGCTCGGGAACTGCCGTCCCTCACGTTTGCGGCTGCCGCGGTAAATATTTATTTCTTTCAGATTTTGGAGCATTGGGTCCTTGATTCGATGCAGTGGTGCTGTAGAGCCGGTGGAGAACCGTAGGGGGTTGAATTCAGCCGCTTGCTGAAGTAAGCGACACTCCAAGGATGAGCGTGCTGGATTCATCGGCTTTGTTGCTGGCTGCATGCGGAGGGGACACTGTAAAGCTATTTGATGTCAGCGCCAAATCTGACGATTCATGTACTTTGAGCTACAAGCCTTCGCCTGGATCTCATGTTAACTCCGTCAAATGGAACCACACAAATCTAGTAGTGGCTAGCGCTGGTGAAGATAAAAAAATATCATTGTGGCATAAAAATGGTCAGAGTATGGGGACAATACCTCTCAATGGCAGTAATTTTGATGATGACATAGATGAGTCCATAGTATCTATTTCCTTCAGTAATAAAAGTTCTAGATATCTTTGTTCTGGGGGGAGTGGCGGTGTCATCAGAATATGGGATTTGCAAAGAAAACGCTGCATCAAATGGTTGAGTGGCCATACAGATACCATTACAGGAGTCATGTACAATTGCAAAGATGAACATCTGGCATCTATCAATATGAAAGGTGATCTAATTTTATATAATCTTGCTTCAGGAACAAGGGTCGCTGATTTCAAAGATCCATATGGGCAGGTATTGAGAGTTCTTGATTATTCTCGACTTAGTCGGCATATTTTGGCCATAGCAGGTGATGATGGGTCCATACATTTGTGGGACACAACTAGTCGTACGCCAAAGGTTTCTTGGTTGAAACAGCATTCTGCTCCAACAACTGGAGTTTGCTTCTCACCATCTAGTGACAAGATAATTGCTAGTGTTGGTTTGGACAAAAAGCTGTATACATTTGATTCAGTCGTGAGAAGATCCACATCTTGTTTTCCATATGAAGCACCTTTCTCTTCACTATCCTACAATGATTCTGGAAATATACTCACTGCCGGAACTAATGGTGGACTCATAGTATTCTATGATGTACGGGGAAAACTTCAACCATTAGCAAGCTTTCGTGCTTTCAATAATTTTGAGTCTGTTTCAAGTTTATGCTGGCAAAGATCGAAGCCCTTTATTGTAAATGAGAGCAACCACACTTTAGAAACTGCTCTTTTTGGGAGTGATAGTGAAGATTCAGTTCTGATGCCTGATCCGCGACCTTTTGTGGCGGCTTCTAGCTTTTCCTCAGCAAATACAGTGACTAGTTCCGGCTTTTCTCTAACAGCATCTACCGGGTCAATGCCAACTACATCTGTTTCTTCTGCAGAGGAAACTCCTTTACGAAGCAGCTTATGGCATGGTGGAAGTTTGACAAAGCTTCAGGCACCTCGTGGTAACTTCACCATGAAGGATGACATGGATATTTTCTCTCCTCTTGTTGATGTCCAGCCAATTACGCCATCCCTCGATAGTTTGTGGGATGATCATGATGAAATAAACAAGGAATCTTTGGCATTGCCAAACAATTCTAGGAGATTTCCCTTTACTGATGGTGACTCTGATTTCTATGCACTCTCAGACTGGAGGTCCGGCAAACATTTGAAGCAGGATGATACTTCTTCACTACTCACGGCCGCTCCCAGTGCTTCAAATATCGAGCCCTCTTTCCCGCCAATTCGTCCAGAAACATGGGCCGGGAATGCATTGCCGAACAAGTTAATTCAAAATCTTCAACCATCCTCTATGCTGTTAGGCCAACCGTCTTCCGCTTCACCCTCGTTCGGCCAGTTCCCGCTTCCGCAAGATTTATCTTCGTTAACCAGCCAAATTTCCAAAACTTTTTTGACAAATCCCTCATCAGTCTCTCTAAATCTGCAAAGTAAATCCATATTGAACAACGAGAGACTGCAGAATTATTCCGAAGCATCATCTTTCCATCATTCCTCATCCCTTTTACCTAGAAAATACGCCACGTACACTGATCGATTAAGTGCTGATGGAATAAATTCTGCCGCTAGCTCCCCGAAATCAAAGAAAACAGGCGTCGAAACCCGGGAAGAACTCTTGAACAGTCTACTGTCAAGGCAGGATGCATCAACTGGTACAGGGAATGATGGCCTTCCAAGAATCGATGGAGCATCATCAGCTCAACTTTCAAGGGCCTCCATTCAGCCGTTGGATCAGCTGGGAAGTTCTTCATTTTCACTTCAGCTGGTTCAGCGCACCCTCAAGGAGACTTTGGAGCCCTTTCAGATGTGTATTCATGATGACGTTAAGAACCTACACATGGAGCTCATCAGACAGTTCCACCTTGAAGAGATGACACTGCTCAATTTCTTAAACCCAATCACTGAAATGCAAAAAGAGCTGATGAAGGAAGTGCAGTCCCTTCGGCGAGAAATGCAGCAGCTTCGTCAGTTGCTTTAATGTTTTGCCTTTGTTGTCTACTTTTTATATAAACTTTATATAGGCTCTTTGTGAAATTGCTGAAATTCTGGTTATATGACTTTTTTCCTTAAAAATTAAAGAGAATTTTGGCATACATAGCTCTCATTTTTCCATCTCCAAATAGCTCTAAAAATGATGGATTATTAAAATTTTATTTTTATGAGACTTTAATATTTACAAAAATGC

Network for GWHGAAEX007378

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	32	68	0.029

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	92.220
SRP064423	SRR2545915	Juvenile tuber	58.520
SRP108465	SRR5643513	five period of Gastrodia elata	34.030
	SRR5643514	five period of Gastrodia elata	34.410
	SRR5643515	five period of Gastrodia elata	31.500
	SRR5643524	five period of Gastrodia elata	32.000
	SRR5643525	five period of Gastrodia elata	34.010
	SRR5643528	five period of Gastrodia elata	34.160
	SRR5643658	five period of Gastrodia elata	42.500
	SRR5643659	five period of Gastrodia elata	37.660
	SRR5643660	five period of Gastrodia elata	46.240
	SRR5643661	five period of Gastrodia elata	37.890
	SRR5643662	five period of Gastrodia elata	37.790
	SRR5643663	five period of Gastrodia elata	40.550
	SRR5643664	five period of Gastrodia elata	44.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	65.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.440
SRP279888	Gastro	Gastrodia elata tuber	44.23
	Juven	Juvenile tuber	61.49
	Mother_Gastro	Mother tuber of Gastrodia elata	27.10
	Mother_Juven	Mother tuber of Juvenile	42.86