Gene detail

Detail information of GWHGAAEX007380/evm.TU.scaffold_2.205

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1267	4.00E-140	Mitochondrial transcription termination factor, mTERF
nr	gi\|672198140\|ref\|XP_008777248.1\|	0	PREDICTED: uncharacterized protein LOC103697211 [Phoenix dactylifera]
trEMBL	tr\|M7ZH20\|M7ZH20_TRIUA	0	Uncharacterized protein {ECO:0000313\|EMBL:EMS47404.1, ECO:0000313\|EnsemblPlants:TRIUR3_21458-P1}
TAIR	AT4G19650	4.00E-140	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	9137978	9149379	+

Transcript Sequence
>GWHTAAEX007380 AATACTGAGAGCTTTCAACACTAATCTTCAGTTTGTTCAGACATGATAAAACGTGGCTTAGCACAAAGAAATTCTTTCCCAAATATGCTTATCCAAGCGAGTAGTGCATTCATTGTTCCTTCTGTTTCTGGTTGTCTGAGTTTTGCTGGGAAGAAACCATATGATTCCTCAAGGGAAGACTGCATTTTTCACTCTAAAAAGTATGTAACTTTAGCCTCCAGTTTCAAGTTGACCAGCCTTGCGCAGAGCACAAATTTCATTGGTTCTCTTATTGTAAAGGACGTTTTGAATTTGAGGAAACTTCATCAACGCAAGCATATTTGTTTTTACATCTCAAGCATGGCTGCAAGCTCATTGCATGATGGAAATTCTGGATTGAGGATGACTCGAACAGATAGAACAAATGCCCAGAAAGCATTGTTCGACTATCTCCACTGCACAAGGTGCTTAAGCTTTACTGATGCTGAGCACATTAGCAAGAATTCACCTGCTTTCATTCAGAGCCTTCTTGCAAAGGTTAGTGATGGTGAAAAAGTTCAGCGGTCGATCGCCAAGCTTCTACGCTTTGCTCCCATCAATGAATTTGAACCATTCTTCGAGAGCTTAGGCTTGAAACCCTCTGAACTGTGTTCCCTTCTTCCTCACAATCTGATTTACCTAACAGATGATGATTTATTGATAATGAATTACCATACCCTCTGTTACTATGGAGTTCCTCGGAGCAAGATTGGGAGGATGTACAAGGATGGAAGTGAGATGTTTAGATATGAATGTGGTGTTTTGAATTTGAAGCTTCAGAGCTATGAGGGGCTTGGCTTGAGCAAACCAACCGTCATCAAGTTGGTCACTTGTTGCCCTACCCTTTTGATTGGCGACATGAACATGGATTTTATTCATGTTCTTAGGAAGCTGAAAGCCTTAGAAGTTGAACTTGATTTGATAAGGGGGTGTTTGTCCGATAAGAGTGCCTATCAGTGGGATCGAATTCTCAAAATGCTTGATTTTTTTGTTGCGATGAGCTGCAACCAGAATGAACTAAAAAAATTAATTATTGAGCATCCCAGATTTTTATTTGATGATTCTGGGAAGAAGATTTACATTTTAGTTGCATTGCTGTTAAAACATGGCATTAAAATGAGTGAAATCTTACTTCTATTTGTACAATATCCTCAAATTCTTTCAGGGAACTTTGTAAAATACTTCTTGAAGGCTATTTACTTCTTGGTTGATATTGGCATGGATGTGGAGGACATTAAAATGATTGTCAAGACTCATCCACATGTTCTAGGAGCGTCATCCAGTCAAAGGCCTCATATTGTCATGCAAAGATTGAATCTGTCAGAGGATAGGCTGCGAGACATCATAAAAAATGATCCAAATCAGTTCACTTATTTGGCTACTAAGAGAATGTCGAGTGTTGTGAGCTTACCTAAAGTTGAGAGCACCTTTCTGAAGGAGAAGACTGATTTCTTACTGAGATTAGGTTATGTTGAGAACTCTGATGAAATGGCAAGAGCCTTGAAAAAATTTCGAGGAAGAGGGGATCAACTGCAGGAAAGATTTGATTTTCTTGTCAAGATTGGTTTTGACTGCCACACTGCTGCCTATATGATCAAATCTTTTCCCCCGGTTTTAAACCAGTCTGTTGTTGTACTTGAAAAGAAAATTACATACCTTTTGAATGATTTGGACTATTCTTTGGAGGCGCTTTCATCTTTTCCAACGTATTTATGCTATAACTTAGAGAAGATAAAATTGAGATTTTCTATGTACCACTGGCTCAGGGAGAATGGAACTCCAAATAGGGCAAGTTCCACAGTTGCCTTGAGCACGGTTCTTGCTTGCTCAGAGAAACGGTTTTTCAAGCATTTTGTAAATCTGCATCGTGAAGGCCCGGAAGAATGGCAAAGATTGAAAAGATTATCCTCTTCAAATTAAAGCTTTAGAATATCTTTGATCTGAGATTGAAAGAGCTTTGATTGTCTTGCTTAAGAATTTTGAACACCGAATTTCTTAAGAAGCTTCCACATTGTTGGTGGGTTTCATTCTTCGCTGTGTATGTGCCTCAGCAGTGACAGCAGGCGGATATAATTGGCCTGTGATAGTAGAGGAGATTTGCCGTCACATGCAAGATGCTTTATGGGTGGTTCAATGCAGAATGAAGCCAAGCAAAATTTAGAAGATCGGCAAAGTTTCCTTTATTATATGAATGGAGTTCATGCCAGATGGCATCAATCAATCCTGGGTTCACTTTGTGTGGAATTTGGTCTTTGCAAGGATCACTCACAAGCGTCCCTTGAATGCTTGTTTTTTCCTCTTGTAATATGTTCCTTTTTGTGGCACTCTTCTCAGTTTTTGTTTGTCTTACTGCACTAATGTACGTTCTTTTCTTTATTTAATGAGGAGGTTATGCACAACTTTTCATAAGAACTGAAGGCTTTTTCCTTTCACATGCAACATTAATCAGTGTCATTATGGCCATGAATAATGATGGCCAAAGTGTAAAACTTGAAAAATAAATGAATTAACTCGTGTTGATCACCT

Network for GWHGAAEX007380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.13	mTERF	319	460	4.30E-13
PF02536.13	mTERF	470	606	2.70E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003690	Molecular Function	double-stranded DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.050
SRP064423	SRR2545915	Juvenile tuber	31.010
SRP108465	SRR5643513	five period of Gastrodia elata	7.450
	SRR5643514	five period of Gastrodia elata	6.250
	SRR5643515	five period of Gastrodia elata	5.150
	SRR5643524	five period of Gastrodia elata	6.820
	SRR5643525	five period of Gastrodia elata	7.160
	SRR5643528	five period of Gastrodia elata	5.530
	SRR5643658	five period of Gastrodia elata	6.910
	SRR5643659	five period of Gastrodia elata	7.660
	SRR5643660	five period of Gastrodia elata	8.220
	SRR5643661	five period of Gastrodia elata	6.680
	SRR5643662	five period of Gastrodia elata	10.280
	SRR5643663	five period of Gastrodia elata	9.610
	SRR5643664	five period of Gastrodia elata	11.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.560
SRP279888	Gastro	Gastrodia elata tuber	15.11
	Juven	Juvenile tuber	30.18
	Mother_Gastro	Mother tuber of Gastrodia elata	9.44
	Mother_Juven	Mother tuber of Juvenile	21.36