Detail information of GWHGAAEX007382/evm.TU.scaffold_2.208
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220919241|ref|YP_002494545.1| | 9.00E-29 | amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1] |
| KOG | KOG1237 | 0 | H+/oligopeptide symporter |
| nr | gi|743846466|ref|XP_010938844.1| | 0 | PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Elaeis guineensis] |
| Swissprot | tr|Q9SX20|PTR18_ARATH | 0 | Protein NRT1/ PTR FAMILY 3.1 |
| trEMBL | tr|M0TSH5|M0TSH5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P21720_001} |
| TAIR | AT1G68570 | 0 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 9229439 | 9235253 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007382
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 88 | 518 | 2.30E-90 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.490 |
| SRR2545915 | Juvenile tuber | 19.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 119.880 |
| SRR5643514 | five period of Gastrodia elata | 119.500 | |
| SRR5643515 | five period of Gastrodia elata | 55.980 | |
| SRR5643524 | five period of Gastrodia elata | 86.320 | |
| SRR5643525 | five period of Gastrodia elata | 2.370 | |
| SRR5643528 | five period of Gastrodia elata | 13.380 | |
| SRR5643658 | five period of Gastrodia elata | 2.020 | |
| SRR5643659 | five period of Gastrodia elata | 15.670 | |
| SRR5643660 | five period of Gastrodia elata | 12.560 | |
| SRR5643661 | five period of Gastrodia elata | 7.770 | |
| SRR5643662 | five period of Gastrodia elata | 2.140 | |
| SRR5643663 | five period of Gastrodia elata | 2.670 | |
| SRR5643664 | five period of Gastrodia elata | 4.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 60.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 82.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 77.280 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 53.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 96.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 75.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 117.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 117.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.82 |
| Juven | Juvenile tuber | 50.26 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.45 | |
| Mother_Juven | Mother tuber of Juvenile | 7.99 |