Detail information of GWHGAAEX007386/evm.TU.scaffold_2.215
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|357393115|ref|YP_004907956.1| | 1.00E-28 | cytochrome P450 [Kitasatospora setae KM-6054] |
| KOG | KOG0156 | 0 | Cytochrome P450 CYP2 subfamily |
| nr | gi|511241579|gb|AGN70893.1| | 0 | cinammate 4-hydroxylase [Dendrobium catenatum] |
| Swissprot | tr|Q42797|TCMO_SOYBN | 0 | Trans-cinnamate 4-monooxygenase |
| trEMBL | tr|R9UNP6|R9UNP6_9ASPA | 0 | Cinammate 4-hydroxylase {ECO:0000313|EMBL:AGN70893.1} |
| TAIR | AT2G30490 | 0 | cinnamate-4-hydroxylase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 9680658 | 9682810 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007386
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00067.21 | p450 | 34 | 491 | 3.10E-115 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP73A5 |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0020037 | Molecular Function | heme binding |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0005506 | Molecular Function | iron ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 57.210 |
| SRR2545915 | Juvenile tuber | 169.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1026.700 |
| SRR5643514 | five period of Gastrodia elata | 626.750 | |
| SRR5643515 | five period of Gastrodia elata | 1651.890 | |
| SRR5643524 | five period of Gastrodia elata | 869.120 | |
| SRR5643525 | five period of Gastrodia elata | 1486.540 | |
| SRR5643528 | five period of Gastrodia elata | 1658.510 | |
| SRR5643658 | five period of Gastrodia elata | 2058.550 | |
| SRR5643659 | five period of Gastrodia elata | 636.520 | |
| SRR5643660 | five period of Gastrodia elata | 373.180 | |
| SRR5643661 | five period of Gastrodia elata | 594.980 | |
| SRR5643662 | five period of Gastrodia elata | 1189.530 | |
| SRR5643663 | five period of Gastrodia elata | 860.020 | |
| SRR5643664 | five period of Gastrodia elata | 324.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 361.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 434.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 417.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 281.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 248.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 254.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 329.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 360.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 844.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 487.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 466.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 466.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 406.00 |
| Juven | Juvenile tuber | 230.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,815.00 | |
| Mother_Juven | Mother tuber of Juvenile | 1,238.58 |