Gene detail

Detail information of GWHGAAEX007394/evm.TU.scaffold_2.229

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4638	3.00E-118	Uncharacterized conserved protein
nr	gi\|743843423\|ref\|XP_010938062.1\|	0	PREDICTED: RING finger and transmembrane domain-containing protein 2 [Elaeis guineensis]
Swissprot	tr\|Q9LW77\|HRD1A_ARATH	2.00E-09	ERAD-associated E3 ubiquitin-protein ligase HRD1A {ECO:0000305}
trEMBL	tr\|V4S607\|V4S607_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR42888.1}
TAIR	AT5G01960	3.00E-118	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	10313159	10336539	+

Transcript Sequence
>GWHTAAEX007394 ATAAGAGGGCTTCAAAATCATTTGGAAAAAAGGTAGCCTTCGCTGATCGTGCAGGAATTGTATGAGCAGAACTAGATGCAGGCGAGAATGGTAGCCTTCGCTGTGTTTTAACGCGAAGATAACTCTTCCCTTTTCTGCTGCTGCAGAAACTGATACCTGCGTTGCCCTCTTCAATTCCCGTCGTTTTCGTCATCATCTAGGGTTTTCTGGAATTCATAACGAGTATCTACGTTCTATTCGATTTTGAAATATCTGATTTACGATAGGAATTTTTTTTATAATGGAAACATCCAGCGGAGATTCCGATTCGTTTCGGGCGCCGGGTACCTCAAGTGCCTCTGGGAATGGCGTCGGTTCGAGGAGGTATGCGATGCAGTTCTCAGCGTCTAGCTTTATTCAGGCGCCGCTTACAGCTTTTCTGGAGTATTCCGGAGTTCTCCGTCCCCGATCGAGCAGTCTTCGGGAGGGCGAGAGCTTTCTTGCAGGTGATTCTGGTGGCGGTTTTGCGGAAAATGCTTCTGGTCGGCGGGAGTTGTTTTCGAATCTGAACGGCGGGGGTGATGGCCAGGTGTATATAAGGATTATCTCTACTGGAGATAATGAAGGCGTTAGGGCTGGTGGTCAAGGACTGGCTCAGCCGTCTGCGAGGGAATGGATAACTGGAGAGAATAGGGCATCTGTCGATGAGATTCCGACGGCATCCAATGATAGTGGGCCGGGAGATGGTGGCCATAGAGAGCATCCAGGGGAGCTCGGTGAATCACTAGGGTCTCAGCAGCCATCGGTCTCACCCTCTATTACCCAGAGCTCAGATGGTGATGCTAGTCTTGGGGGATCTAGCAGCAGGGAATCACCTTACCAAAGATTTGATATTCAACAGCTTGCAAGATGGGTTGAGCAGATACTTCCGTTCTCTCTACTGTTATTGATAGTGTTTATTCGGCAGCATTTACAAGGATTCTTTGTAACCATCTGGATAGCAGCGGTGATGTTCAAATCAAATGACATATTACGGAAGCAAACTGCTTTGAAGGGGGAAAGGAAACTACCCATACTTGCTGGGATATCAGTGATTTTTATGCTTCATGTCTTTGGCATATACTGGTGGTATAGGAATGATGATCTCTCCAGCCCTCTGCTGCTTCTCCCTTTGAAGGAAATTCCATCATTCTGGCATGCTATATTTATAATTTTGGTGAATGACACAATGGTCAGACAGGCAGCTATGGTATTAAAATGTGTGCTGCTAATGTATTACAGAAATAGTAGGGGGCAAAGTTATCGGAAACAGGGTCAACTGTTAACTGTTGTGGAATATCTTCTTCTCTTGTACCGTGCATTATTGCCATCACCCGTTTGGTACAGATTCTTTCTTAACAAGGAATATGGGAGCCTCTTTTCTTCCCTCATTACTGGCCTATATTTGACCATCAAGCTGACATCCGCTGTGGAGAAGGTTCAATCATTCCTTGCATCTGTGAAGGCCTTGTCTTGTAGAGACGTGCATTATGGCTCACATGCAACAGCAGAACAGGTAATTGCAACTGGTGATCTTTGTGCTATTTGCCAAGAGAAGATGCAGGTTCCTATTCTCCTCCGCTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGATAGAGAGCGAACGTGCCCATTATGCCGGGCTCTGGTAAAGCAGGCGGGGCTTCGATCTTTTGGGGACGGCTCAACCAGTTTGTTCTTCCAGCTCTTTTGATTTGTTGTACAGTAAAATCTGGAAGCTTGGCTAGGTACGGGCGTACAGCAGTACCCAGCTCTATTTCCCTGCTAATTTTTGGCGATTTTATTGTTCTTTTTCAGCAAGAACCAGTTTAATACAATCGTGTTTATAAATAATTTAATTTATGTTATAAGTTCTGCAGTGAAAACTCTTAGAAATTTCTGAAGAGATGCATAACTTTAGCTGCCACCTGATTGGATGATGGGAATCCATGGCAATACTGTTGCCCGAACGTTTGTAAAGAATTAGTTAATTCTTAAAAATAAGAATCCTTTATATTTGCTCACTATCTGTTGGATATGCGGAGTTTCCTAATTAAGTTTCAATATTTATATAAAGTAACTATAGCACAAAAGTACTAGCATTGCTGAAAAGCCCGTCGTCTACTTTAAATGCTAATATATGTTCATCCTATATGTTCTTGCAAAGTATCAATAATTGTGCAAAT

Network for GWHGAAEX007394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.5	zf-C3HC4_3	424	469	2.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.810
SRP064423	SRR2545915	Juvenile tuber	28.740
SRP108465	SRR5643513	five period of Gastrodia elata	37.540
	SRR5643514	five period of Gastrodia elata	42.620
	SRR5643515	five period of Gastrodia elata	41.300
	SRR5643524	five period of Gastrodia elata	43.340
	SRR5643525	five period of Gastrodia elata	32.780
	SRR5643528	five period of Gastrodia elata	41.080
	SRR5643658	five period of Gastrodia elata	26.200
	SRR5643659	five period of Gastrodia elata	38.690
	SRR5643660	five period of Gastrodia elata	42.380
	SRR5643661	five period of Gastrodia elata	34.810
	SRR5643662	five period of Gastrodia elata	50.350
	SRR5643663	five period of Gastrodia elata	48.980
	SRR5643664	five period of Gastrodia elata	73.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.100
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.260
SRP279888	Gastro	Gastrodia elata tuber	55.82
	Juven	Juvenile tuber	60.18
	Mother_Gastro	Mother tuber of Gastrodia elata	71.55
	Mother_Juven	Mother tuber of Juvenile	96.91