Detail information of GWHGAAEX007400/evm.TU.scaffold_2.238
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|161598325|ref|YP_635197.2| | 1.00E-116 | methionine aminopeptidase [Myxococcus xanthus DK 1622] |
| KOG | KOG2738 | 0 | Putative methionine aminopeptidase |
| nr | gi|672184106|ref|XP_008812354.1| | 0 | PREDICTED: methionine aminopeptidase 1A isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SLN5|MAP1A_ARATH | 0 | Methionine aminopeptidase 1A {ECO:0000255|HAMAP-Rule:MF_03174} |
| trEMBL | tr|Q0ZPT8|Q0ZPT8_ANACO | 0 | Methionine aminopeptidase 1 {ECO:0000256|HAMAP-Rule:MF_03174} |
| TAIR | AT2G45240 | 0 | methionine aminopeptidase 1A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 10692136 | 10733037 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007400
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF15801.4 | zf-C6H2 | 89 | 131 | 1.40E-14 |
| PF00557.23 | Peptidase_M24 | 219 | 447 | 3.80E-55 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004177 | Molecular Function | aminopeptidase activity |
| GO:0008235 | Molecular Function | metalloexopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.160 |
| SRR2545915 | Juvenile tuber | 30.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.450 |
| SRR5643514 | five period of Gastrodia elata | 27.630 | |
| SRR5643515 | five period of Gastrodia elata | 27.710 | |
| SRR5643524 | five period of Gastrodia elata | 27.610 | |
| SRR5643525 | five period of Gastrodia elata | 17.980 | |
| SRR5643528 | five period of Gastrodia elata | 18.450 | |
| SRR5643658 | five period of Gastrodia elata | 11.450 | |
| SRR5643659 | five period of Gastrodia elata | 28.150 | |
| SRR5643660 | five period of Gastrodia elata | 34.510 | |
| SRR5643661 | five period of Gastrodia elata | 32.750 | |
| SRR5643662 | five period of Gastrodia elata | 25.640 | |
| SRR5643663 | five period of Gastrodia elata | 28.740 | |
| SRR5643664 | five period of Gastrodia elata | 27.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.08 |
| Juven | Juvenile tuber | 29.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.43 | |
| Mother_Juven | Mother tuber of Juvenile | 32.37 |