Gene detail

Detail information of GWHGAAEX007407/evm.TU.scaffold_2.246

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383763166\|ref\|YP_005442148.1\|	1.00E-120	histidinol-phosphate aminotransferase [Caldilinea aerophila DSM 14535 = NBRC 104270]
KOG	KOG0633	0	Histidinol phosphate aminotransferase
nr	gi\|695022046\|ref\|XP_009398134.1\|	0	PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FEW2\|HIS8_NICPL	0	Histidinol-phosphate aminotransferase, chloroplastic (Precursor)
trEMBL	tr\|M0SRQ4\|M0SRQ4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P24430_001}
TAIR	AT5G10330	0	histidinol phosphate aminotransferase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	10782718	10798183	+

Transcript Sequence
>GWHTAAEX007407 GCACTTTCTTACAGTTTTCCGCGATCGTGGAAGCTGCAAGAGATCTGGAATCCCGTAGCGAATCTCTCTCCTAATAAATCTTCTTGAACCTCACTTGCACTTCTAATGGCCCTTCTTAGAATCTCAAGCGCTTCTTCGTACATAGGCACAGTCAATCTAGGCTTCTACTCCGTCAACAAAAACCGACGGAGTTTCATTGCCTCCACCGCGGTTTCTGAACAGATAGATGGAACGCAGAGCCGGGTGACCGGCGATTCCTTCATTCGTCTCCACCTTAAGAAGCTATCTCCGTATCATCCAATCCTCCCATTCGAGGTTTTGTCCGCACGTTTGGGGAGGAAGCCTGAAGAAATAATCAAGCTTGATGCAAATGAAAATCCATATGGCCCTCCTCCAGAGGTTGCTGAAGCATTGGGAACATTGAAATTTCCTTATATATATCCAGATCCAGAGAGCCGCAGCTTGCGTGCTGCCCTTGCGAAAGATTGTGGTCTTGAAATGGACTATATCCTTGCTGGATGTGGAGCTGATGAGTTAATTGACTTGATTATGAGATGTGTACTTGATCCCAGTGACAAGATTGTTGATTGCCCCCCTACATTTACAATGTATGAGTTTGATGCAAAGCTAAATGGTGCTTTAGTTATCAATGTTCCAAGGCTCCCAAATTTCAGATTGGACATTCCTCACGTTATTGAAGTTGTTGAACACGAAAAACCAAAATGCATTTTCCTGACTTCTCCAAACAACCCGGATGGAAGTATAATCAATGATGAAGATCTTCTGAAGGTTCTGAACTTACCCATATTGGTAGTGCTGGATGAAGCCTACATCGAATTCTCCGGTCTTCAATCAAGGATGAATTGGGTCAAGGAGCACGATAACTTGATCGTTCTCCGTACATTCAGCAAAAGAGCAGGGTTAGCTGGGCTTCGTGTAGGCTATGGAGCTTTTCCTCTCAGCATTATCCAATATTTGTGGCGGGCAAAGCAACCCTACAATGTGTCTGTGGCGGCAGAGGTCTCTGCCTGCGCTTCTTTGCAAAATCCTGCTTATCTCGAGAGAGTGAAGAATGATCTTGTGGGAGAACGGAAGCGATTGTTTGATCTTCTGAAAGAAGTGCGTTACCTTAAGCCATTTCCAAGTTTCTCCAACTTCATCCTCTGTGAGGTCACCTGTGGAAGAGATGCCAAGAAGCTGAAGGAAGATCTTGCGGGCATGGGCGTCATGATCCGACACTTCGGCACTAAGGAGCTGAGAGGCTGCGTTCGGATCTCTGTTGGAAAGCCTGAGCACACTGACATGCTACTCAAGTGCCTAAAACTCCTCGAATAACTTTACTAACAAGACAAAGGAATCCCTACTATTTGGAGCAACAAATAAAATGTATAAATGATGAGAGATTTTGTATTTTAAGTGAGAAATGAGATCGATGAGATGCACCTTTATTTGTGATTATGATTATATCTCTCTTAAACATGCAATGTTCTTTTTATTAATTATTTTTATCTGAAAAAATTAATGTAGGATTGTAACATGTCATAATTTGAATCGAAGTCTAAGCATAATGTTGGCATTTATTTTCTTATATATTAAAATCTAAAGATTTTGTCTTCC

Network for GWHGAAEX007407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.20	Aminotran_1_2	82	402	7.10E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00817	hisC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Biosynthesis of amino acids	map01230
		Histidine metabolism	map00340
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		Tryptophan metabolism	map00380
		Isoquinoline alkaloid biosynthesis	map00950
		Novobiocin biosynthesis	map00401

Gene Ontology

GO term	Ontology	Name
GO:0000105	Biological Process	histidine biosynthetic process
GO:0009058	Biological Process	biosynthetic process
GO:0004400	Molecular Function	histidinol-phosphate transaminase activity
GO:0003824	Molecular Function	catalytic activity
GO:0030170	Molecular Function	pyridoxal phosphate binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.750
SRP064423	SRR2545915	Juvenile tuber	45.650
SRP108465	SRR5643513	five period of Gastrodia elata	51.010
	SRR5643514	five period of Gastrodia elata	55.160
	SRR5643515	five period of Gastrodia elata	51.530
	SRR5643524	five period of Gastrodia elata	63.930
	SRR5643525	five period of Gastrodia elata	27.180
	SRR5643528	five period of Gastrodia elata	42.500
	SRR5643658	five period of Gastrodia elata	21.820
	SRR5643659	five period of Gastrodia elata	56.720
	SRR5643660	five period of Gastrodia elata	55.170
	SRR5643661	five period of Gastrodia elata	59.930
	SRR5643662	five period of Gastrodia elata	61.770
	SRR5643663	five period of Gastrodia elata	57.910
	SRR5643664	five period of Gastrodia elata	49.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.140
SRP279888	Gastro	Gastrodia elata tuber	55.26
	Juven	Juvenile tuber	51.95
	Mother_Gastro	Mother tuber of Gastrodia elata	35.55
	Mother_Juven	Mother tuber of Juvenile	40.25