Detail information of GWHGAAEX007408/evm.TU.scaffold_2.247


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34672.00E-66Histone H4
nrgi|195617694|gb|ACG30677.1|8.72E-66histone H4 [Zea mays]
Swissprottr|P0CG89|H4_SOYBN7.00E-67Histone H4
trEMBLtr|Q5NSW2|Q5NSW2_FRAAN5.00E-65Histone H4 {ECO:0000256|RuleBase:RU000528} (Fragment)
TAIRAT5G599702.00E-66Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101080752510808171-
Transcript Sequence

Network for GWHGAAEX007408

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15511.5CENP-T_C35961.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0005634Cellular Componentnucleus
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.980
SRR2545915Juvenile tuber53.470
SRP108465SRR5643513five period of Gastrodia elata79.170
SRR5643514five period of Gastrodia elata131.020
SRR5643515five period of Gastrodia elata80.730
SRR5643524five period of Gastrodia elata94.050
SRR5643525five period of Gastrodia elata43.490
SRR5643528five period of Gastrodia elata28.800
SRR5643658five period of Gastrodia elata17.930
SRR5643659five period of Gastrodia elata27.000
SRR5643660five period of Gastrodia elata19.230
SRR5643661five period of Gastrodia elata19.630
SRR5643662five period of Gastrodia elata23.730
SRR5643663five period of Gastrodia elata35.000
SRR5643664five period of Gastrodia elata24.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1108.080
SRR6049655Rhizomagastrodiae_C368-T10_good_1121.840
SRR6049656Rhizomagastrodiae_C368-T07_good_1167.640
SRR6049657Rhizomagastrodiae_C368-T07_good_196.720
SRR6049658Rhizomagastrodiae_C368-T04_good_172.170
SRR6049659Rhizomagastrodiae_C368-T04_good_155.380
SRR6049660Rhizomagastrodiae_C368-T01_good_197.500
SRR6049661Rhizomagastrodiae_C368-T04_good_1103.670
SRR6049662Rhizomagastrodiae_C368-T01_good_1170.620
SRR6049663Rhizomagastrodiae_C368-T01_good_1106.730
SRR6049664Rhizomagastrodiae_C368-T10_good_1183.600
SRR6049665Rhizomagastrodiae_C368-T10_good_1183.600
SRP279888GastroGastrodia elata tuber 20.66
JuvenJuvenile tuber24.08
Mother_GastroMother tuber of Gastrodia elata 95.03
Mother_JuvenMother tuber of Juvenile 19.07