Detail information of GWHGAAEX007414/evm.TU.scaffold_2.255
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374985367|ref|YP_004960862.1| | 4.00E-33 | cytochrome P450 family protein [Streptomyces bingchenggensis BCW-1] |
| KOG | KOG0156 | 0 | Cytochrome P450 CYP2 subfamily |
| nr | gi|672135943|ref|XP_008791650.1| | 0 | PREDICTED: cytochrome P450 84A1-like [Phoenix dactylifera] |
| Swissprot | tr|Q42600|C84A1_ARATH | 0 | Cytochrome P450 84A1 |
| trEMBL | tr|A7LNG7|A7LNG7_LEULE | 0 | Cald5H {ECO:0000313|EMBL:ABS53040.1} |
| TAIR | AT4G36220 | 0 | ferulic acid 5-hydroxylase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 11000780 | 11003958 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007414
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00067.21 | p450 | 33 | 495 | 1.80E-94 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP84A1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09755 | CYP84A, F5H | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0020037 | Molecular Function | heme binding |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.980 |
| SRR2545915 | Juvenile tuber | 13.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.540 |
| SRR5643514 | five period of Gastrodia elata | 91.670 | |
| SRR5643515 | five period of Gastrodia elata | 49.190 | |
| SRR5643524 | five period of Gastrodia elata | 123.660 | |
| SRR5643525 | five period of Gastrodia elata | 479.880 | |
| SRR5643528 | five period of Gastrodia elata | 340.310 | |
| SRR5643658 | five period of Gastrodia elata | 1136.660 | |
| SRR5643659 | five period of Gastrodia elata | 38.710 | |
| SRR5643660 | five period of Gastrodia elata | 19.770 | |
| SRR5643661 | five period of Gastrodia elata | 24.650 | |
| SRR5643662 | five period of Gastrodia elata | 10.870 | |
| SRR5643663 | five period of Gastrodia elata | 11.720 | |
| SRR5643664 | five period of Gastrodia elata | 5.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.27 |
| Juven | Juvenile tuber | 3.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.64 | |
| Mother_Juven | Mother tuber of Juvenile | 8.33 |