Detail information of GWHGAAEX007418/evm.TU.scaffold_2.260
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 2.00E-60 | MADS box transcription factor |
| nr | gi|237701153|gb|ACR16037.1| | 3.27E-111 | DEFICIENS-like MADS-box transcription factor [Gongora galeata] |
| Swissprot | tr|Q944S9|MAD16_ORYSJ | 1.00E-77 | MADS-box transcription factor 16 |
| trEMBL | tr|C5I9R2|C5I9R2_9ASPA | 1.00E-111 | DEFICIENS-like MADS-box transcription factor {ECO:0000313|EMBL:ACR16037.1} |
| TAIR | AT3G54340 | 2.00E-60 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 11145072 | 11149287 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007418
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 46 | 93 | 1.90E-21 |
| PF01486.16 | K-box | 118 | 204 | 4.50E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.050 |
| SRR2545915 | Juvenile tuber | 1.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.190 |
| SRR5643514 | five period of Gastrodia elata | 5.670 | |
| SRR5643515 | five period of Gastrodia elata | 0.990 | |
| SRR5643524 | five period of Gastrodia elata | 1.920 | |
| SRR5643525 | five period of Gastrodia elata | 3.530 | |
| SRR5643528 | five period of Gastrodia elata | 4.740 | |
| SRR5643658 | five period of Gastrodia elata | 0.810 | |
| SRR5643659 | five period of Gastrodia elata | 2.050 | |
| SRR5643660 | five period of Gastrodia elata | 0.610 | |
| SRR5643661 | five period of Gastrodia elata | 0.910 | |
| SRR5643662 | five period of Gastrodia elata | 0.220 | |
| SRR5643663 | five period of Gastrodia elata | 0.170 | |
| SRR5643664 | five period of Gastrodia elata | 0.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.35 |
| Juven | Juvenile tuber | 2.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.89 | |
| Mother_Juven | Mother tuber of Juvenile | 0.73 |