Detail information of GWHGAAEX007420/evm.TU.scaffold_2.262


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|150391208|ref|YP_001321257.1|1.00E-446-phosphogluconolactonase [Alkaliphilus metalliredigens QYMF]
KOGKOG31473.00E-886-phosphogluconolactonase - like protein
nrgi|743828159|ref|XP_010933782.1|7.13E-112PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Elaeis guineensis]
Swissprottr|A2Z3C4|6PGL4_ORYSI4.00E-108Probable 6-phosphogluconolactonase 4, chloroplastic (Precursor)
trEMBLtr|B9G4P3|B9G4P3_ORYSJ9.00E-107Putative uncharacterized protein {ECO:0000313|EMBL:EEE70091.1}
TAIRAT5G244003.00E-88NagB/RpiA/CoA transferase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101117301711176440+
Transcript Sequence

Network for GWHGAAEX007420

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01182.19Glucosamine_iso152441.00E-67
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01057PGLS, pgl, devB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Pentose phosphate pathwaymap00030

Gene Ontology

GO term OntologyName
GO:0006098Biological Processpentose-phosphate shunt
GO:0005975Biological Processcarbohydrate metabolic process
GO:0017057Molecular Function6-phosphogluconolactonase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms89.180
SRR2545915Juvenile tuber154.200
SRP108465SRR5643513five period of Gastrodia elata76.960
SRR5643514five period of Gastrodia elata82.280
SRR5643515five period of Gastrodia elata78.050
SRR5643524five period of Gastrodia elata81.230
SRR5643525five period of Gastrodia elata129.680
SRR5643528five period of Gastrodia elata114.000
SRR5643658five period of Gastrodia elata100.010
SRR5643659five period of Gastrodia elata147.290
SRR5643660five period of Gastrodia elata164.090
SRR5643661five period of Gastrodia elata152.710
SRR5643662five period of Gastrodia elata158.800
SRR5643663five period of Gastrodia elata151.750
SRR5643664five period of Gastrodia elata180.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1104.300
SRR6049655Rhizomagastrodiae_C368-T10_good_1109.580
SRR6049656Rhizomagastrodiae_C368-T07_good_189.260
SRR6049657Rhizomagastrodiae_C368-T07_good_193.620
SRR6049658Rhizomagastrodiae_C368-T04_good_188.890
SRR6049659Rhizomagastrodiae_C368-T04_good_194.040
SRR6049660Rhizomagastrodiae_C368-T01_good_190.950
SRR6049661Rhizomagastrodiae_C368-T04_good_177.160
SRR6049662Rhizomagastrodiae_C368-T01_good_170.090
SRR6049663Rhizomagastrodiae_C368-T01_good_178.030
SRR6049664Rhizomagastrodiae_C368-T10_good_1110.980
SRR6049665Rhizomagastrodiae_C368-T10_good_1110.980
SRP279888GastroGastrodia elata tuber 200.02
JuvenJuvenile tuber127.87
Mother_GastroMother tuber of Gastrodia elata 58.51
Mother_JuvenMother tuber of Juvenile 53.83