Gene detail

Detail information of GWHGAAEX007421/evm.TU.scaffold_2.263

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|443244162\|ref\|YP_007377387.1\|	2.00E-08	tetratricopeptide domain protein [Nonlabens dokdonensis DSW-6]
nr	gi\|743777795\|ref\|XP_010919338.1\|	0	PREDICTED: uncharacterized protein LOC105043475 [Elaeis guineensis]
trEMBL	tr\|A0A059CGL7\|A0A059CGL7_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW77321.1}
TAIR	AT5G41950	0	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	11178900	11202286	+

Transcript Sequence
>GWHTAAEX007421 GATTGTATAAGAAAGAATATAACAAGCCGCAAGCCCGTTAAGAAGAGCAGAAAGATCTGTAGTGAGTGGGAATTGAGAATTCAGATTTGTTGTTCTATAATCATAGAAGTTGCGATCCCCGGTGTCCCTCTTTTTAGGCGATTCACGTCTACTAATTTTCCACTCCCACATTGACAGAGAAAAAACCCTAATTCCTTCGGCGCAACCATGGAGCAGAGGGCATCGACTAGCGGCGAGGAGCCCACGGCGGAAATCCAGGACGGGAACCCGGTGGGAGAAAGCGATTCTGGGACGAAGGAGAAGGATAGTTCGATCCCTTCGAGCAAATCTGAGGAGAACATCGCCGGAACTGGAAGCCGAACTTTTACAATGAGGGAGCTTTTGAACGAGCTGAAGAATGAGGAGGCTGGATCTGGAAAAGCGGTGAATACCGAATTCACCATCAACGGCGAGGAAGCTCATTGGGCTAGTACCGCAGCGTCCGATGGGAGCCGTAGGGATGGTGGATCTCGTTCCAGTAATGAAGGATTTTCACAGCCCTCTAGTACTGATAATGATGCTTCCATGGAGCTAATCAGTAAAGTGTCTGGAATAGATGACGAAGGCAGATCTCGGCAGAAAATCCTCGTTTTCTCTGCTAAAAGGTATGCAGATGCAATAGAAAAAAATCTTAATGACCATGACGCTTACTACAATTGGGCCCTTGTTCTTCAGGAGAGTGCTGACATAGTTGCTCCGGACTCAACTTATCCTTCAAAAGATGCATTGCTTGAGGAGGCTTGTAAAAAATATGAGCAGGCTACCCAGCTATGTCCTACTCTTCATGATGCTTTTTATAACTGGGCTATTGCTATCTCCGATCGAGCAAAAATACGAGGCCGAACCTTAGAGGCTGAAGAGTTATGGAAGCAGGCGACAAAATACTATGAAAAGTCTATTCAACTTAACTGGAACAGCCCTCAGGCTCTTAACAATTGGGGTCTTGCCCTACAGGAACTTAGTGCTATAGTTCCTCTTCGGGACAAACAAAACATTGTGCGGTTGGCTATAAGTAAGTTTCGTGCCTCTATTCGTCTCCAATTTGATTTTCATAGGGCAATTTACAATCTAGGGACAGTTCTGTATGGATTAGCAGAGGATACAGTTAGATCTGGAAGGGTAGTTAACCAAAAAGAAGTCTCTGCCAAGGAACTTTACAGTCAATCAGCTATTTATATTGCAGCTGCTTATGCACTAAAGCCAACCTATTCGGTCTATCGCAGTGCCTTGAAGTTAGTTCACCCAAAGATACCCTTACCCTTTCTTAAAGTGGGAAATTTGATGGCACCACCTGCTAAAAAAACTTTGGCACCGCATGCAGATTGGGAAAGATCGCAGTTTGTTTTAACTCATGAAGGATTCCAACAGGTTAGTAATGGTAGGCAGGAATCAGCTAAGAATTCTTATGGCAGTTCACAAGAAGATAGTCATAGTGATAAATCAGTGATAAAAGTTGAAATACCGGACATTCTCTCAGTCTCAGCTTGTGCAGACCTGACATTGCCTCCTGGTGCAGGACTTTGTGTAGACACGGTTCAAGGTCCTGTTTTTTTGATTGCTGACACGTGGGAGTCGCTGGACGGTTGGCTGGATGCTATTCGCCTCGTTTACACCATATATGCCAGAGGAAGGAGCGACGTTCTCGCCGGAATTTTAGCCGAGTAATTCCAATTTCTCTTAGATACAAGACTCACTTGCATCAAATATATAATTACTATATTTTTATTTAACAATGTATTTAAAGCTTTAATAATTTTTAATTTTTTTTTTGTCAATATTGTCCTTTACTATCTCCCAATAAAATGAGTTCTTTAATAATCATTCATATCACTCCAATTTTTACAAATCCTCCTATTGCACAGCCCAAATAGCATCAAAAAAACTCTTTTTTGCATGAGGGGAATACTAAAAATGCATATTTAATTTGTATATATTGCATTTCCAGTGATTTAACTGTTACATTTATATATAAAATATTCTAATTTCAATGTCTTTATATATTTGGTGAAGTATATTCATTATTATCTGAT

Network for GWHGAAEX007421

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06552.11	TOM20_plant	234	357	7.40E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.660
SRP064423	SRR2545915	Juvenile tuber	51.070
SRP108465	SRR5643513	five period of Gastrodia elata	44.820
	SRR5643514	five period of Gastrodia elata	44.830
	SRR5643515	five period of Gastrodia elata	43.170
	SRR5643524	five period of Gastrodia elata	45.580
	SRR5643525	five period of Gastrodia elata	32.870
	SRR5643528	five period of Gastrodia elata	42.130
	SRR5643658	five period of Gastrodia elata	42.450
	SRR5643659	five period of Gastrodia elata	52.600
	SRR5643660	five period of Gastrodia elata	47.000
	SRR5643661	five period of Gastrodia elata	52.590
	SRR5643662	five period of Gastrodia elata	49.320
	SRR5643663	five period of Gastrodia elata	51.220
	SRR5643664	five period of Gastrodia elata	48.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.870
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.850
SRP279888	Gastro	Gastrodia elata tuber	38.52
	Juven	Juvenile tuber	42.68
	Mother_Gastro	Mother tuber of Gastrodia elata	37.44
	Mother_Juven	Mother tuber of Juvenile	42.79