Gene detail

Detail information of GWHGAAEX007424/evm.TU.scaffold_2.266

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4197	FOG: PPR repeat
nr	gi\|743803709\|ref\|XP_010927001.1\|	PREDICTED: pentatricopeptide repeat-containing protein At3g60050-like [Elaeis guineensis]
Swissprot	tr\|Q7X6A5\|PPR81_ARATH	Pentatricopeptide repeat-containing protein At1g55630
trEMBL	tr\|M0TPI9\|M0TPI9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P11360_001}
TAIR	AT1G55630	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	11227663	11229126	+

Transcript Sequence
>GWHTAAEX007424 ATGAGGTCAGCCATTTCCTTTTCACGTAGGCCAATACTCAGCCCTTCTTTTCTCCATCAACGTCTTTGGCCGTCGGCTGGCTTCTGTGACGATCGGTGCAGAACAAATGATGGGTGTTTGGAAGGTCATCAAGAAACTTTGCTTTTTGGATCCATTTCCGATGAATCGCTTCTCGGGCTTCCTCCCCCTGCCAACGTGGAAGCTGAGGAAGATGGACGTGATAGCCACATCCCTCGTAAGAGGTTTTTGGAGGCGATTAAAATTGAAGCCAATCGAATATTTGAGATTCTACAGCAGGATGGGCCAGGATTCAATGTTAGAGAAGCTCTGGATGAACTTAATGTGAGTGTCTCTGCTGCTCTTGTACGGGAAGTTCTGCTCCACATACTAATTTCTATCAATGGGGCAAACAAGCAGCGGTGCTCTAGAATGGGCTTCAAGTTCTTCGTTTGGGCTGGCCAGCAGGATGGCTATAAGCACACCACTAATGCCTACAATATTGCTATGAAGATCTTTGCCGAATCGGAGGAGTTAAAGGCCATGTGGAAATTGGTCGATGAGATGACACAGACAGGGCTCCCTGTCACCCCACGCACCTTCAACACATTAATTTGTGCCTGTGGAGAAGCCGGAATGGCTAGAAAAGTTGTGGAGAGATTTATAAAATCACAGAGTTTCAACTATGGACCTTATAAGCACTCATTCAATGCAATTCTTCATTCTCTTATTATCATGAGCCAGTACAGGCTGATTGAATGGGTATATCAACTGATGTTGCTTGAGGGACATCATCCTGATGTTTTGACCTACAATGTTGTCTTGTGTGCAAAATTTAGGTTGGGAAAGTTGGATCAGTTTCACAGGTTACTTGATGAGATGCAAGACAAAGGATTGACACCAGATTTGCATACCTATAATATCCTGCTTCATGTGCTTGGAAAAGGTGATAAACCTCTTGCCGCTGTTGAATTATTGAACTATATGACAGATGTTGGGTGTCATCCGAGTGCACTCCATTTCACTAACTTGATAGATGGCCTCAGCCGTGCAGGAAATCTTGATGCTTGCAAGTATTTCTTTGATGAAATGATTAAGAAGGGGTGTAAACCAGATGTAGTTTGCTATACGGTTATGATAACAGGATATATAGTGGCTTGCGAGTTTGAGAAGGCTCAGGAGCTATTTGATCAAATGCAAAAAGGGGGGCAGCTCCCCAATGTGTTCACTTATAATTCTATGATTCGTGGACTTTGCTTTGCCGGTAGATTTAATGATGCATGTTTTATGTTGAAGGATATGGAAAACAAGGGCTGTAAACCAAATTTCTCTGTCTATAGTACATTGGTTAGCAAGTTGAGAAATGCAGGAAAGGTTTCAGAGGCAAATGATATAATTAATCATATGGTTGAGAGGGGTCACTATCTTCATATGTTATCAAGGTTCAAGGGGTATAGGAGAATTTAG

Network for GWHGAAEX007424

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13041.5	PPR_2	162	207	4.00E-08
PF13041.5	PPR_2	265	313	2.40E-12
PF01535.19	PPR	340	368	4.60E-06
PF13041.5	PPR_2	370	418	2.40E-16
PF13812.5	PPR_3	430	471	0.0075

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	157.080
SRP064423	SRR2545915	Juvenile tuber	84.420
SRP108465	SRR5643513	five period of Gastrodia elata	4.400
	SRR5643514	five period of Gastrodia elata	4.590
	SRR5643515	five period of Gastrodia elata	4.310
	SRR5643524	five period of Gastrodia elata	5.140
	SRR5643525	five period of Gastrodia elata	4.920
	SRR5643528	five period of Gastrodia elata	3.870
	SRR5643658	five period of Gastrodia elata	3.770
	SRR5643659	five period of Gastrodia elata	5.440
	SRR5643660	five period of Gastrodia elata	5.220
	SRR5643661	five period of Gastrodia elata	6.490
	SRR5643662	five period of Gastrodia elata	4.570
	SRR5643663	five period of Gastrodia elata	4.540
	SRR5643664	five period of Gastrodia elata	5.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	67.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	89.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	156.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	194.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	107.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	126.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	78.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.070
SRP279888	Gastro	Gastrodia elata tuber	75.69
	Juven	Juvenile tuber	8.89
	Mother_Gastro	Mother tuber of Gastrodia elata	6.77
	Mother_Juven	Mother tuber of Juvenile	4.99