Detail information of GWHGAAEX007427/evm.TU.scaffold_2.269
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2841 | 4.00E-134 | Structure-specific endonuclease ERCC1-XPF, ERCC1 component |
| nr | gi|672167912|ref|XP_008803935.1| | 4.59E-158 | PREDICTED: DNA excision repair protein ERCC-1 [Phoenix dactylifera] |
| Swissprot | tr|Q9MA98|ERCC1_ARATH | 1.00E-134 | DNA excision repair protein ERCC-1 |
| trEMBL | tr|K7LJM3|K7LJM3_SOYBN | 7.00E-155 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G29730.2} |
| TAIR | AT3G05210 | 4.00E-134 | nucleotide repair protein, putative |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 11302161 | 11335404 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007427
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03834.13 | Rad10 | 111 | 223 | 3.00E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10849 | ERCC1 | Nucleotide excision repair | map03420 |
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0004519 | Molecular Function | endonuclease activity |
| GO:0003684 | Molecular Function | damaged DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.540 |
| SRR2545915 | Juvenile tuber | 6.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.170 |
| SRR5643514 | five period of Gastrodia elata | 7.670 | |
| SRR5643515 | five period of Gastrodia elata | 8.210 | |
| SRR5643524 | five period of Gastrodia elata | 10.030 | |
| SRR5643525 | five period of Gastrodia elata | 9.230 | |
| SRR5643528 | five period of Gastrodia elata | 10.810 | |
| SRR5643658 | five period of Gastrodia elata | 11.120 | |
| SRR5643659 | five period of Gastrodia elata | 7.440 | |
| SRR5643660 | five period of Gastrodia elata | 8.320 | |
| SRR5643661 | five period of Gastrodia elata | 8.530 | |
| SRR5643662 | five period of Gastrodia elata | 8.660 | |
| SRR5643663 | five period of Gastrodia elata | 9.080 | |
| SRR5643664 | five period of Gastrodia elata | 10.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.18 |
| Juven | Juvenile tuber | 19.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.30 | |
| Mother_Juven | Mother tuber of Juvenile | 13.97 |