Detail information of GWHGAAEX007432/evm.TU.scaffold_2.277
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-175 | FOG: PPR repeat |
| nr | gi|695075963|ref|XP_009385242.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g53170 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SCP4|PP279_ARATH | 5.00E-176 | Pentatricopeptide repeat-containing protein At3g53170 |
| trEMBL | tr|M0RUA7|M0RUA7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P21770_001} |
| TAIR | AT3G53170 | 2.00E-175 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 11420897 | 11433307 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007432
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 125 | 154 | 0.0057 |
| PF13041.5 | PPR_2 | 160 | 205 | 1.50E-09 |
| PF13812.5 | PPR_3 | 215 | 277 | 0.00058 |
| PF13041.5 | PPR_2 | 298 | 347 | 1.50E-11 |
| PF13041.5 | PPR_2 | 405 | 450 | 1.70E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.320 |
| SRR2545915 | Juvenile tuber | 7.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.260 |
| SRR5643514 | five period of Gastrodia elata | 5.940 | |
| SRR5643515 | five period of Gastrodia elata | 5.170 | |
| SRR5643524 | five period of Gastrodia elata | 5.340 | |
| SRR5643525 | five period of Gastrodia elata | 3.640 | |
| SRR5643528 | five period of Gastrodia elata | 2.900 | |
| SRR5643658 | five period of Gastrodia elata | 3.320 | |
| SRR5643659 | five period of Gastrodia elata | 7.330 | |
| SRR5643660 | five period of Gastrodia elata | 6.770 | |
| SRR5643661 | five period of Gastrodia elata | 5.030 | |
| SRR5643662 | five period of Gastrodia elata | 6.440 | |
| SRR5643663 | five period of Gastrodia elata | 7.370 | |
| SRR5643664 | five period of Gastrodia elata | 6.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.52 |
| Juven | Juvenile tuber | 12.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.25 | |
| Mother_Juven | Mother tuber of Juvenile | 7.74 |