Detail information of GWHGAAEX007438/evm.TU.scaffold_2.285
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146304798|ref|YP_001192114.1| | 1.00E-91 | replication factor C small subunit [Metallosphaera sedula DSM 5348] |
| KOG | KOG0991 | 0 | Replication factor C, subunit RFC2 |
| nr | gi|694436700|ref|XP_009345441.1| | 0 | PREDICTED: replication factor C subunit 2 [Pyrus x bretschneideri] |
| Swissprot | tr|Q7XRX1|RFC4_ORYSJ | 0 | Replication factor C subunit 4 |
| trEMBL | tr|D7TW50|D7TW50_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI34725.3} |
| TAIR | AT1G63160 | 0 | replication factor C 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 11680000 | 11706977 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007438
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00004.28 | AAA | 53 | 170 | 3.00E-15 |
| PF08542.10 | Rep_fac_C | 239 | 324 | 7.10E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10755 | RFC2_4 | DNA replication | map03030 |
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.800 |
| SRR2545915 | Juvenile tuber | 17.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.090 |
| SRR5643514 | five period of Gastrodia elata | 15.540 | |
| SRR5643515 | five period of Gastrodia elata | 13.090 | |
| SRR5643524 | five period of Gastrodia elata | 14.450 | |
| SRR5643525 | five period of Gastrodia elata | 10.490 | |
| SRR5643528 | five period of Gastrodia elata | 9.100 | |
| SRR5643658 | five period of Gastrodia elata | 8.330 | |
| SRR5643659 | five period of Gastrodia elata | 20.160 | |
| SRR5643660 | five period of Gastrodia elata | 19.940 | |
| SRR5643661 | five period of Gastrodia elata | 19.840 | |
| SRR5643662 | five period of Gastrodia elata | 19.330 | |
| SRR5643663 | five period of Gastrodia elata | 18.410 | |
| SRR5643664 | five period of Gastrodia elata | 15.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.99 |
| Juven | Juvenile tuber | 34.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.42 | |
| Mother_Juven | Mother tuber of Juvenile | 18.36 |