Gene detail

Detail information of GWHGAAEX007439/evm.TU.scaffold_2.286

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|296089063\|emb\|CBI38766.3\|	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q0WV12\|ANL2_ARATH	Homeobox-leucine zipper protein ANTHOCYANINLESS 2
trEMBL	tr\|M0SXD0\|M0SXD0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P10510_001}
TAIR	AT3G61150	homeodomain GLABROUS 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	11712005	11719527	+

Transcript Sequence
>GWHTAAEX007439 CCCCCCCCCCCCCCACCCCCCACCCCTCCCCTGCTTTAATTTGCTTTCCTTTCTGGAGAGACCTCCTAGATCTGAGAAAATAATAAAAAAAAAAAAACGAGATTTTGCCAAGGGAAGAGCGTCAAAGAATGAGTTTTGGGGGTTTATTCGACACCGATTTGGCGTACGGAAGCTCGGTCTTGCCTGCCGGAGTTCTCTCTCAGCCTCCTCGAGTATTCCTCTCCGGCTCCGCCGTACAAAAGCCGATGTACGGCTCCGCCGGCCTTTCTCTCGGTCTGGGAGAGTTAAACCAGTTAGCCGTGGCACCCTCCGCCGTCTGCGCCGGCGGTGGCGGCGCTCTGGATGGTTTGTGCCGGAACAAGGACGAAGAGAACGAGAGCCGATCAGGCAGCGACAACCTGGAATGCGGCTCAGGCGACGATCTCGACCAGGAGAATCCTCGCAAGAAGAAGCGCTATCATCGCCACACCCCTCAACAGATTCAGGAGCTCGAAGGCCTGTTCAAAGAATGTCCTCACCCCGACGAGAAACAAAGGCTGGAGCTCAGCAAACGTCTCGGCCTCGAGACTCGCCAGGTCAAATTCTGGTTCCAGAACCGTAGGACTCAAATGAAGACTCAACTGGAGCGGCACGAGAACACAATACTGAGGCAGGAGAACGACAAGCTGCGTGCGGAGAACATTTCGATCAGGGACGCGATGCGGTCGGCGATCTGCGGGAACTGCGGCGGGGCGGCGGTCGTCGGGGAGATTTCGCTGGAAGAGCAGCACCTCCGGTTCGAGAACGCGAGGCTGAGGGACGAGCTCGACCGGGTCTGTGCCCTCGCAGGAAAGTTCCTCGGCCGTCCGATCCCCGCATTGCCGGTCGATCCCGCCGTCGGCTGCGGGACTGGACCGGCGGAGCGGTCGGCTCTGCTGGAGCTGGCGCTCTCCGCCATGGACGAGCTCGTGAGGAAGGCAGAGATGGGGCCGCCGCTCTGGATCGCTGCCGCCGATGCCGGCAAGGAGGTCCTCAATGGCGAGCAGTACGAGCAGCTCTTTCCTCGCTGCGTTGGAGGCAAGTGCTTTGATTTCGTCTGCGAGGCCACGCGGGAGACCGCCCTGCCTTTCATTTCCGCCGCCTCTCTTGTTGACACTCTCATGGACGCGAACCGTTGGGCTGATATGTTTACTGGGATCATCGCGAGGGCAACCACAGTGGATGTAATTTCTACAGGGGTCGGCGGGACAAGGAACGGCTCGCTTCAGCTCATGCATGCGGAGCTCCAGGTGCTGTCCCCTCTGGTTCCTATACGGGAAGTGAATTTCCTGAGATTCTGCAAGCAGCTAGCGGACGGCTCCTGGGCTGTGGCTGATGTCTCCGTCGACGGATCAAGGGACCAGCTTTCATCATCTGCCTCCGGTTCGATCAGAGCCAAATGCCGCAAACTTCCATCTGGCTGTATTGTGCAGGATATGCCCAATGGCTACTCCAAGGTGACGTGGGTTGAGCACGCCGAGTACGACGAGGCGGCGGTTCACCAGCTGTTCAGGCCGCTGCACCGATCGGGATTGGCCCTCGGCGCTCAGCGGTGGGCCGCCGCTCTCCAGAGGCAGTGCGACTGCGCGGCGATGCTGATGTCGCCGTCCCCTCCAAATCGGGACCCCAACAGCATCACTGCGTCCGGAAGGAGGAGCATGATGAAGCTGGCGCAGCGGATGACGGACAACTTCTGCGCGGGCGTTTGCGCTTCTTCGGCGAGAAAGTGGAGGCGGCTGGCGAATATGGGGAGCATCGGAGAGGACGTGAGGGTGATGACGAGGCAGAGCATGGACGATCCGGGAGAGCCGCCCGGCGTCGTGCTCTCCGCGGCGACATCCGTTTGGCTTCCCGTCTCGCCGCAGCGCCTCTTCGACTTCCTTCGCGATGAGAGCCTCCGCTGCCAGTGGGACATCCTCTCCAACGGCGGGCCCATGCAGGAGATGGCTCATATCTCGAAAGGCCGGGATCACGGCAACGCCGTCTCCTTGCTCCGCTCTAGCGCGGCGAACGCGAACCAGAGCAGCATGCTGATACTCCAGGAGACGTGCGCGGACGCATCGGGGTCGATGGTCGTGTACGCCCCCGTGGACGTGCCGGCTATGCATCTGGTGATGAACGGAGGAGATTCAGTTTACGTGGCACTTCTCCCATCCGGGTTCGCTGTCAGCCCCGACGGAGCAGGGACGGGCGGCGGGTCCCTCCTGACAGTGGCGTTTCAGATACTGGTGAACAGCCTGCCGACGGCGAAGCTGACGGTGGAGTCCGTGGAGACGGTGAATAACCTGATCTCGTGCACTGTGCAGAAAATACGAGCGGCTCTGCAGTGCGAGAGCTGATGGATGAAGCGAGCAGGAATGAATGAATGAATGAATGAATGACTGGCTTGGGGGGTCGAGTCAAGAACGAACCGTGCGCGCGTCTTTGCCAAGTGCTGAGCCCCCTGCGGGGCTTACTTTTAGGAAATTCTTCAGCACGGAGCAAGTGGGGTGCTGGTTCGGGTATTGACTCTCTGCCTCTCATTAGGGTGTTGGAAGGTTGCTCTAATCCTTTCTTCTTCTTCTTCTTCTTCTTGTCTTTTTTGTTTCTTGTTGTTCGGTTAATCGAGTTGTGCTATCATGAATATTTACTTTGTTTTTGTTGTTGTCTCATCTAATGATGTTTTTGCTGATTTTTTAATCTTATAGTTTGCTCATCTTCAGTGTTCCTATCTTATGTGTTTTTGGTACAAAAAAAGCTAGTTTTACATATGGCAATGGCACCATTGTAGGAAGAATGGATTTAGAAAATGAGAGTATTGG

Network for GWHGAAEX007439

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	107	162	2.60E-19
PF01852.18	START	264	491	2.20E-45

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.140
SRP064423	SRR2545915	Juvenile tuber	3.060
SRP108465	SRR5643513	five period of Gastrodia elata	11.510
	SRR5643514	five period of Gastrodia elata	8.280
	SRR5643515	five period of Gastrodia elata	7.090
	SRR5643524	five period of Gastrodia elata	9.350
	SRR5643525	five period of Gastrodia elata	15.040
	SRR5643528	five period of Gastrodia elata	14.860
	SRR5643658	five period of Gastrodia elata	18.780
	SRR5643659	five period of Gastrodia elata	2.210
	SRR5643660	five period of Gastrodia elata	1.460
	SRR5643661	five period of Gastrodia elata	3.330
	SRR5643662	five period of Gastrodia elata	7.280
	SRR5643663	five period of Gastrodia elata	3.750
	SRR5643664	five period of Gastrodia elata	9.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.360
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.870
SRP279888	Gastro	Gastrodia elata tuber	1.71
	Juven	Juvenile tuber	1.94
	Mother_Gastro	Mother tuber of Gastrodia elata	24.69
	Mother_Juven	Mother tuber of Juvenile	3.48