Gene detail

Detail information of GWHGAAEX007440/evm.TU.scaffold_2.287

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672143056\|ref\|XP_008795397.1\|	PREDICTED: probable methyltransferase PMT15 [Phoenix dactylifera]
Swissprot	tr\|Q9ZPH9\|PMTF_ARATH	Probable methyltransferase PMT15
trEMBL	tr\|F2CPS7\|F2CPS7_HORVD	Predicted protein {ECO:0000313\|EMBL:BAJ84848.1}
TAIR	AT4G00750	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	11822402	11825139	-

Transcript Sequence
>GWHTAAEX007440 CTCCCAAAAGCTCTTACCTTTACTATAAAAAAAAATCCTTTTACAAAATGCACAGTATAGCTACATGTTCATGCCTCGCGGTGAACAAGTTTCCATGTATTGCACACTATATAGCATAATAGCTTGAGAGCACCTTTCCTCTCCCAACTCTCCCCTCCTTTTAAAGAGAGCGTTGAAAGGCTGTCGCATCCATGGCCGGCGCCGCCACACCACTGGCCACAGCGTTCAAGCTTTCGAAATCCTATAAGAAACCCATGCTTAACCTTGCGAACGTCACCCTCGTCTCCATCCTCTGCTCTGCATTCTACCTCCTCGGACTCTGGCAGCACGCCGGCAACACGCCCTCCCTTTCAGCTTCAGCGGAAGTCAGCGCCGCCGTAGTGCCGCGGCGGCTCTTTCCGCCCTGCGCTGCGGAATTCTCAGAGCACACTCCGTGCGAGGACGTGCAGCGTTCGCTGAAGTTCGAGCGCGAGCGGCTTATTTACAGGGAACGGCACTGCCCTCCCAAAGATGAGATTTTGAAGTGCTTGGTTCCTGCCCCGGAGGGATACAGAGCGCCGTTTCAATGGCCGGAGAGCAGAGAGTTCGCCTGGTTCGCGAACGTGCCGCACAAGGAGCTCACCGTCGAGAAGGCGGTTCAGAACTGGATTCAAGTCGAAGGAGACAAGCTGCGGTTCCCCGGAGGAGGCACCATGTTCCCCAATGGCGCCGACGCCTACTTAGACGACATTGCCAGACTCATTCCCCTCACCGACGGCTCCATTCGAACCGCCATTGACACTGGGTGCGGGGTCGCCAGCTGGGGAGCTTTCCTTCTGTCCAGAAATATCACGGCCATGTCATTCGCGCCGAGGGATTCGCACGAGGCGCAGGTGCAGTTCGCTCTCGAAAGAGGCGTTCCGGCGATGATCGGAGTTTTGGCTTCAAATCGGCTTCCTTACCCTGCCCGCTCCTTCGACGTGGCGCACTGCTCCCGCTGCCTCATCCCCTGGCACCATTACGAGGGGATTTACCTTATAGAAATCGACAGAATTCTCCGGCCGGGGGGGTACTGGATCCTATCTGGGCCGCCGATTAACTGGAAGCGGCACTGGAAAGGATGGGAGCGAACAGAGGATGACCTGAGGGAAGAACAGAGCTCCATTGAATCCGTCGCTCGAAGCTTGTGCTGGAAGAAGATAGCCGAGAAGGGCGATATAGCCGTCTGGCAGAAACCCAGGAACCACATCCACTGCAGAATCAGCCGCAAAGTCATAAAAACTCCGCCTTTTTGCCCCTCCCCTGATCCAGACTCCGCCTGGTACAGAAAGATGGAGTCTTGCATCACCCCTCTCCCCGAAGTTTCCGGAATCAAGGAAATCGCCGGCGGCGAGGTTAGGAGGTGGCCGGAGAGGCTCACCGCTGTGCCGCCGAGGATCGAAAGAGGAGGCATTGACGGCGTCAACGCCGATGGATTCTTTCAGGACAGCGAGCTTTGGAGGAAGAGGGTTGGGCGCTACAGAGGGCTAGTTCCGCAGCTGGTACAGAAGTATCGCAACATTCTGGACATGAACGCCAAGCTCGGCGGATTCGCCGCCGCACTTCTTAATGATCCTCTTTGGGTCATGAACGTTGTTCCGACGGCCGCAGCCGCCGCCGCTCTTGGCGTCGTTTATGAGAGGGGGCTGATCGGAACCTACCAAGATTGGTGCGAGGCCATGTCAACGTATCCCAGGACCTATGATCTTCTTCATGCCGATTCCTTGTTTACACTCTACCTAGACAGGTGCGAGATGGAAAATATACTGCTGGAAATGGATAGGATATTGAGGCCCGGGGGAGCAGTGATCATAAGGGATGACGTGGACGTAGTCGTGAGGGTAAAGAGCATCGCGGATGGGATGAGATGGGATATTCAAATGGCTGACCACGAGGATGGGCCCCACCACAGGGAGAAGCTTCTATTGGCTGTCAAGAGATACTGGACCTCTTCCCCATCAGAGCACTCTGCGTCTACCTTCTCCTAATCCCCTCATCATAATTATTATTCTAATTAATAAGGGCTCGCTTCCCTGTTGTTAGTTAAAAAATAAATTATTTTAAATCTCTAATTCATAAATAATGTGAATTCATGCAATTTAAGCTCGATTATTTGTTCTATAATTTTTAGCTTAATAATTTAATCTAGCTTCAATTTTATTAGCACGATGGCCTATTTGAAAGTGAAATATGCGATTGTTAATGGAGAATCTCTTCTTC

Network for GWHGAAEX007440

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03141.15	Methyltransf_29	78	588	2.80E-224

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.100
SRP064423	SRR2545915	Juvenile tuber	0.230
SRP108465	SRR5643513	five period of Gastrodia elata	12.330
	SRR5643514	five period of Gastrodia elata	6.110
	SRR5643515	five period of Gastrodia elata	6.930
	SRR5643524	five period of Gastrodia elata	4.820
	SRR5643525	five period of Gastrodia elata	0.630
	SRR5643528	five period of Gastrodia elata	1.020
	SRR5643658	five period of Gastrodia elata	0.340
	SRR5643659	five period of Gastrodia elata	0.260
	SRR5643660	five period of Gastrodia elata	0.120
	SRR5643661	five period of Gastrodia elata	0.220
	SRR5643662	five period of Gastrodia elata	0.680
	SRR5643663	five period of Gastrodia elata	0.210
	SRR5643664	five period of Gastrodia elata	0.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.950
SRP279888	Gastro	Gastrodia elata tuber	2.13
	Juven	Juvenile tuber	6.00
	Mother_Gastro	Mother tuber of Gastrodia elata	81.82
	Mother_Juven	Mother tuber of Juvenile	9.78