Gene detail

Detail information of GWHGAAEX007441/evm.TU.scaffold_2.288

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695040746\|ref\|XP_009407963.1\|	4.26E-179	PREDICTED: scarecrow-like protein 28 isoform X2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9CAN3\|SCL28_ARATH	1.00E-139	Scarecrow-like protein 28
trEMBL	tr\|M0SQD8\|M0SQD8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P19750_001}
TAIR	AT1G63100	3.00E-139	GRAS family transcription factor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	11831312	11833247	+

Transcript Sequence
>GWHTAAEX007441 TTATGCAAAGAAAAAAAAATAGGAAAAGAGAAGAAAAGGAAGACGATTTATTTGACAAATAATATACTTGTGAGGATTAAAATCTAAAAGGTAGAATTTTGATAGATTTAAAAAAAAAATTAAGAGGGTATTGGCTGGTGTGCTCTTCGACACTTCTGTTGCAGATGCATCAATTCATTCGTGCTTCGGTGTAGTTTTAGAAAGAGAATGGGAACTCAAAGGCTCGAGTTTCCTTGTAGTTTCAGAAGGAAGGAAGAAGCCAAGAGTTCCTTCTCCTTACAAAGACCGGCTGAAAGAAGGGGATCTTGTTTCTTCCGACCGACACCTGTAACTATAGCCCAAACCGCCTCTTGGGAGGGTAGACAAGAGATCAGAATACAGAAGCTGAACAGGAAAAGGAGCCTTCAAAAGTTTTATGAATCTGTTGACGAACCAAGGAAGAAGAGAACTTACAGCAGTGGAGAAAGAGATGCCAAGGATGAAAAAAAACCATCTTTCTTTGATATTCACCCCATATCTGGTTCTAATTATTCAAGTGACACGCATGAAGATTCATCAGAAGGAGTTTCGGTATTCGAAAGCAAAGCCAATGTGAGAAGAGCTGAGCATGAGGGACTCGAGCTTCTCAGTCTGCTAATCCAATGCACGCAGGCATTTAGCTCAAGCAAACACACTGCAGCAAACTTCTATCTTTCAAGATTAGGGAATCTGTCCTGTCCTAATGGAACACCAATCCACCGCTTAGTAGCTTACTTCACTGAAGCCTTAGCGCTTCGAGCAGCCAACAAATGGCAGCACATTTTCTCTATTGCCCCACCACGAGAGCTCGCCGAAGCGAATCAAAATTGTGAAGCAACGGCACTCAGAATTCTTAACAACGTGACTGCAATCCTAAGATTTATCCATTTTACCTTGAACGAGAGAATGCTTGCAGCATTTGGAGGAAAGGAGCGCGTTCACATCATAGATTTTGATATAAGGCAGGGCCTTCAATGGCCGAGCCTCTTACACTGCTTGGCCTCCATGTCTAATCCTCCAACTCATGTAAGAATTACAGGCATCGGTGAATCAAAGCAGGAGCTTCAAGATACTGGAGCTAGACTTGCAGGATTGGCTCAAGAGCTTCGGCTTCCGTTTGAATTCCATTCGGTGGTAGATAGGGTTGAGGATATCAGGCTTTGGATGCTTCATGCCAAGGAGAAGGAATGCGTGGCAGTGAACTGTGTTTTGCAGCTGCACCGTGCTCTTTATGATGAGAATGGTACAGTTCTGATGGGGATATTGGGTCTCATAAGAAGCACAAACCCTACTATTGTTCTGTTGGCGGAGACCGAAGCTGATCACAATGAGCAGAGATGGGAGATGAGACTTGCAAATGCTCTCAAGTACTATTCGGCTGTGTTTGATTTGTTGGATCATAGCTTTACAGGAGATAGCCCATTGAGATTCAAGCTTGAAGAAATGTTTGCAAGAAAGATTAGGAATGTGGTTGCAGAGGAAGGAGCAGAAAGAGTGGAGAGGCATCAGAGGTTTGACAGGTGGAGAGGGATGATGCAGGAGGTTGGTGGATTCCGTAGCGTTGGATTTAGTGAGAGGGAGATTGCTCAGAGCAAGATGCTTCTCAAGATGTATACTTGTGAGAATTATTGCGTGGAAAAGGAAGGAGAAGGAGATGGATTTGGGCTTACACTTAAGTGGATGGGTCAGTCTCTGTACACAGTCTCAGCTTGGGCTCCCATGAAACCAGCGTTGCAATCAGGTTGCAGTTTGCAGCATTGAGCGGCAGAGAAAACTTGTGTTTTTTTTTATGATTTGGAGGATTGTTTATCTTTTCTTCTTTGATCTTAAAGATGCAGACAAGCTGAAACCTTGTCTTTATTTTTTAAATTCTTTTGTACAAGTGCTTTTATTTAGATGAGTTCTTTTCGGTTGTATC

Network for GWHGAAEX007441

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03514.13	GRAS	140	508	9.90E-117

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.040
SRP108465	SRR5643513	five period of Gastrodia elata	0.160
	SRR5643514	five period of Gastrodia elata	0.400
	SRR5643515	five period of Gastrodia elata	0.270
	SRR5643524	five period of Gastrodia elata	0.200
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.040
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.110
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.160
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.10
	Mother_Juven	Mother tuber of Juvenile	0.00