Detail information of GWHGAAEX007442/evm.TU.scaffold_2.289


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08001.00E-09FOG: Predicted E3 ubiquitin ligase
nrgi|743828471|ref|XP_010933875.1|3.40E-58PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like isoform X1 [Elaeis guineensis]
Swissprottr|Q8L649|BB_ARATH9.00E-15E3 ubiquitin ligase BIG BROTHER
trEMBLtr|M0STG2|M0STG2_MUSAM2.00E-53Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30500_001}
TAIRAT3G199101.00E-09RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101185364611879867+
Transcript Sequence

Network for GWHGAAEX007442

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms110.390
SRR2545915Juvenile tuber68.130
SRP108465SRR5643513five period of Gastrodia elata41.350
SRR5643514five period of Gastrodia elata46.720
SRR5643515five period of Gastrodia elata34.850
SRR5643524five period of Gastrodia elata36.510
SRR5643525five period of Gastrodia elata28.600
SRR5643528five period of Gastrodia elata27.720
SRR5643658five period of Gastrodia elata34.680
SRR5643659five period of Gastrodia elata31.210
SRR5643660five period of Gastrodia elata34.840
SRR5643661five period of Gastrodia elata32.740
SRR5643662five period of Gastrodia elata35.610
SRR5643663five period of Gastrodia elata36.350
SRR5643664five period of Gastrodia elata34.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_153.710
SRR6049655Rhizomagastrodiae_C368-T10_good_145.800
SRR6049656Rhizomagastrodiae_C368-T07_good_146.460
SRR6049657Rhizomagastrodiae_C368-T07_good_151.470
SRR6049658Rhizomagastrodiae_C368-T04_good_154.590
SRR6049659Rhizomagastrodiae_C368-T04_good_153.270
SRR6049660Rhizomagastrodiae_C368-T01_good_144.930
SRR6049661Rhizomagastrodiae_C368-T04_good_136.940
SRR6049662Rhizomagastrodiae_C368-T01_good_150.410
SRR6049663Rhizomagastrodiae_C368-T01_good_147.980
SRR6049664Rhizomagastrodiae_C368-T10_good_150.380
SRR6049665Rhizomagastrodiae_C368-T10_good_150.380
SRP279888GastroGastrodia elata tuber 44.18
JuvenJuvenile tuber49.94
Mother_GastroMother tuber of Gastrodia elata 18.26
Mother_JuvenMother tuber of Juvenile 27.39