Gene detail

Detail information of GWHGAAEX007445/evm.TU.scaffold_2.292

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695019924\|ref\|XP_009396992.1\|	7.43E-80	PREDICTED: protein YLS9-like [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0SPW5\|M0SPW5_MUSAM	3.00E-80	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P18020_001}
TAIR	AT5G53730	2.00E-58	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	11929045	11932074	+

Transcript Sequence
>GWHTAAEX007445 TCTAAGTTATGCACCTAGTATTTGGTTATAAATTTTGAGTTTTTCATGAGTATATTTCAACTTGTATAAAATAAGATATATTCTCATAAGTTTTCACAATCTTTTCTCAAAGTTTGCCTAGTAATTACATAAGAATCCTTCTAATTTTTCCTATTTATAAAATAGTCCAAACAAAACTATTTTAATAAATTGACAAAACATTTCCTAGTATTTCATCACTATGGACTTGGACTTGTCTTTCCCTTCTACTTAATAACTCCACAGCCTGCCTTAGACGCCTAAAGATCAAAAACCGAACATCGATCTCTCCCTTTCCTAAATGTCAATCATCTACGCCATCTCCCCTAAACACTGCGGCTCAACCAAAGAAACTCCCATATCTTCCCTTCTCCGCCTCAAAAGGCTCAACAAAAAGCTACTCTTCACCCTCTCTTCTCTCTTCTTCTCCCTCCTCTTCCTCTCCCTCCTCTTCTTCCTCGTCCTCCACCCTTCCAAACCACAGTTCTACATCCGAGAAGCTACCCTCTATGGCTTCTCACTCTCGCCCCTCCCGCGCCTCCTCAACTCCACTATCCAAGCCACCATCGTCTCCAAGAACACAAACTCGCACGTCGGCATCTACTACGACCGCCTCCGCGCCTATGCCTTGTGCAAGGGAGAGCACATCACCTCCGAGGCGGAGCTTCCTCCTTTTTATCAAGGGCACGATGACGCCGACATTCTCTCAACTTCGCTTTCCGGCATCAGCGTGCCGGTGGGGTTGGCGTTCGGGTACGAGGTCGGGAGAGACCAGGCCGCCGGGAAGATGGTTTTGAGGGTTAGGTTGGATGGGGAGTTGAGGTGGAGGGTGGGGAGTTGGGTTACAGGGAGGTATCTTTTTGATGTCGATTGTGTGGTTGTGATCGGTTACAGAGGTGGCAGCACGGGTGGGGGTGTGATGATCGGTTCGACAGAAGGGACCCGATGTTCTACAAATGTTTAATGCTGAGTTATATAGCAAATGAATGATGAAAGCATGGGGTGAGTGAATGTTGGTGTGCATATACAAGCATGATGTATTTTTGGTGTATATGAATGCCAAATTTGTTAAACCCTTATGATTAGTATTTTCATCATTCAACAAATTAGAAATGTATATATATATATATATATATATATATATATTATTAGTTTAATAAGATGTAAGCTAATTATATTAGTGATCTCATTAGTCAAGGGATTCGAGCCAAACAAAGTAGCTCTTAAAATTCACTAATCTCTTTATTAATAAAGTAAACAAATTCCATAAGAAAAGATTAATGACTTATTTTCAACACCTAACAAAAAATGGCCGAGCATGAGGATGTTCTAGCTAGCTAACAATTGCTTTAGGAAAGTAAATTTTTAATTAAAAATAATAAATAACAATCTATATTCTATCAAAAAGTCTCTTGTGCTCTTCAAAAGTTGTCATTATTATTCTAATAATTAGTTAAAAGTTAAATGTGAATTGGAACTCAATAAAACATACACTTCAAGAAAATTCTTATAGGAGGGCTCAATTTCATTCCAAGAGAATAAAAAATTATAATATTTACAATGATCAAAGGAAATAAATAGATTCTAAGAGATCCTAGAATAAGAAAAAGCAAAGTTTCTCAAACAAAGGCAAAAAAATTGAAAATATTTTTGATGCTAGCTCTAAGGTAGAGAATGGAAGGGGATTAACACCATACATCACAAATGAAATCAGAAGCAATTACTCAATGATCCACACTGCAAAATATAAATTTGCCAAAACATACAATATTATTCTTTTTCGCATGGATCGCCACGAGAGCCCCAACAGATAATTATCAATTGCAATACAAGGTATTCTAGGTGTTACAACTTTACTTCACCGTCAAGATATATTATTTATGTAATAATTTAAAAACTAAATTAGAACATTTAACATTATTACTTTTACTATTTTACTCATTAATTTGGTTGCCTTAAATAAGCATTAAGATTTTAATGATTTGAACATTATGTTCAATCAATGTATCATAAGAGATCCAAGTGACTATTAAATTCTTGAATGTACTAGTATAATCGAATAATTAACTTACTATCTATAATTTGTCTAATAGCAAACCATTCTTCATAGCGAGGATATTTAGAAGAAATAACTCAAATTCAGTTTAATCAATTTTATAAGACTATGGTAAATGTATTTGTATCTAACACCAATATTTCAAGATTAGGTAAATATCTAATCTTAATCATTCATAATGAGTAGCTAGTAGTAATCCAAAGATAATGTTGCTAGTGCACAAAAAATAAATAAATTGAAAAGTCTTGCACATTAAGAAGAGCTAATGACCTTTATTTTACGATTATCACTAAACATACTTTGGGCTTGCTATTGTTACACTCTTGTTTAATTGAAGATTATTATTTAGGCACTCAAAATAATTAGGTCGGATTTAACTACCTGATTGGGTTTGATATTTTTGTGAGTATCTGGAGGTCTTCATGGATTTTGAGATTCTTATATTGATATTTTAGTACTTATACTTTACTCTTTTCATTTCTATAGGGTGTAATAATATAATATTTTAATTTATTATATAATATTTTAATATTGGACAAATAATTCTTTTTTTTTTAATCTTAATCCTCAAATATTTCATTTTCAATTTATAGTAGAGCCTTGCAAGTGCTAGTGGCAATGACAAATTTAAATATTTAGGATTCTCAAACTATCTTAAGAATTTAATAGCCCTTACAGATCCTTCAGATATTGTCGATTTTGAAAGTAATCATATCAATTCACCCTTGTTGGCAAGCATTCTTGATTAATAGGTGGCACAAGTAAATAAGTGACGGTTTTCATCAAATTATTGAAGTTCATCAATAACCTAAATTTAACTAAGTTGTTGAATATGACTTAGTTTGAAATTTGTTTAAAATAATTAGTGTAGCTAAATTTAAATGAATGCCTCTAAAATGAGTCTCCAAAAATATATTTATAAGTTTTAAAATATTCTTGAAAAAATATCAATAAAT

Network for GWHGAAEX007445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03168.12	LEA_2	91	189	7.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.900
SRP064423	SRR2545915	Juvenile tuber	0.470
SRP108465	SRR5643513	five period of Gastrodia elata	10.850
	SRR5643514	five period of Gastrodia elata	7.730
	SRR5643515	five period of Gastrodia elata	14.280
	SRR5643524	five period of Gastrodia elata	12.430
	SRR5643525	five period of Gastrodia elata	180.470
	SRR5643528	five period of Gastrodia elata	115.040
	SRR5643658	five period of Gastrodia elata	138.650
	SRR5643659	five period of Gastrodia elata	1.880
	SRR5643660	five period of Gastrodia elata	1.600
	SRR5643661	five period of Gastrodia elata	1.970
	SRR5643662	five period of Gastrodia elata	18.170
	SRR5643663	five period of Gastrodia elata	17.080
	SRR5643664	five period of Gastrodia elata	30.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.370
SRP279888	Gastro	Gastrodia elata tuber	25.44
	Juven	Juvenile tuber	13.99
	Mother_Gastro	Mother tuber of Gastrodia elata	49.16
	Mother_Juven	Mother tuber of Juvenile	111.15