Detail information of GWHGAAEX007446/evm.TU.scaffold_2.293


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428224035|ref|YP_007108132.1|1.00E-41SSU ribosomal protein S30P,sigma 54 modulation protein [Geitlerinema sp. PCC 7407]
nrgi|590674564|ref|XP_007039204.1|2.09E-112Plastid-specific 30S ribosomal protein 1 [Theobroma cacao]
Swissprottr|P19954|PRSP1_SPIOL3.00E-106Ribosome-binding factor PSRP1, chloroplastic (Precursor)
trEMBLtr|A0A061G1K9|A0A061G1K9_THECC8.00E-113Plastid-specific 30S ribosomal protein 1 {ECO:0000313|EMBL:EOY23705.1}
TAIRAT5G244901.00E-11030S ribosomal protein, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101193213811970084+
Transcript Sequence

Network for GWHGAAEX007446

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02482.18Ribosomal_S30AE901864.90E-20
PF16321.4Ribosom_S30AE_C2322853.00E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0044238Biological Processprimary metabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms101.710
SRR2545915Juvenile tuber39.510
SRP108465SRR5643513five period of Gastrodia elata23.600
SRR5643514five period of Gastrodia elata17.530
SRR5643515five period of Gastrodia elata20.150
SRR5643524five period of Gastrodia elata18.220
SRR5643525five period of Gastrodia elata38.550
SRR5643528five period of Gastrodia elata31.230
SRR5643658five period of Gastrodia elata31.480
SRR5643659five period of Gastrodia elata16.910
SRR5643660five period of Gastrodia elata16.080
SRR5643661five period of Gastrodia elata16.420
SRR5643662five period of Gastrodia elata15.620
SRR5643663five period of Gastrodia elata15.300
SRR5643664five period of Gastrodia elata20.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.510
SRR6049655Rhizomagastrodiae_C368-T10_good_134.120
SRR6049656Rhizomagastrodiae_C368-T07_good_139.290
SRR6049657Rhizomagastrodiae_C368-T07_good_156.970
SRR6049658Rhizomagastrodiae_C368-T04_good_165.630
SRR6049659Rhizomagastrodiae_C368-T04_good_167.130
SRR6049660Rhizomagastrodiae_C368-T01_good_152.010
SRR6049661Rhizomagastrodiae_C368-T04_good_152.300
SRR6049662Rhizomagastrodiae_C368-T01_good_126.680
SRR6049663Rhizomagastrodiae_C368-T01_good_130.380
SRR6049664Rhizomagastrodiae_C368-T10_good_129.910
SRR6049665Rhizomagastrodiae_C368-T10_good_129.910
SRP279888GastroGastrodia elata tuber 18.39
JuvenJuvenile tuber14.48
Mother_GastroMother tuber of Gastrodia elata 38.71
Mother_JuvenMother tuber of Juvenile 80.97