Detail information of GWHGAAEX007461/evm.TU.scaffold_2.315
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|153009012|ref|YP_001370227.1| | 2.00E-17 | major facilitator superfamily transporter [Ochrobactrum anthropi ATCC 49188] |
| KOG | KOG2816 | 1.00E-73 | Predicted transporter ADD1 (major facilitator superfamily) |
| nr | gi|695026114|ref|XP_009400334.1| | 1.84E-172 | PREDICTED: hippocampus abundant transcript-like protein 1 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0SXN5|M0SXN5_MUSAM | 7.00E-173 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P11560_001} |
| TAIR | AT2G16980 | 1.00E-73 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 12588591 | 12592488 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007461
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07690.15 | MFS_1 | 11 | 413 | 9.50E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005887 | Cellular Component | integral component of plasma membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.040 |
| SRR2545915 | Juvenile tuber | 0.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.000 |
| SRR5643514 | five period of Gastrodia elata | 4.720 | |
| SRR5643515 | five period of Gastrodia elata | 8.310 | |
| SRR5643524 | five period of Gastrodia elata | 5.090 | |
| SRR5643525 | five period of Gastrodia elata | 20.640 | |
| SRR5643528 | five period of Gastrodia elata | 19.390 | |
| SRR5643658 | five period of Gastrodia elata | 34.410 | |
| SRR5643659 | five period of Gastrodia elata | 0.110 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.120 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.030 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.440 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.02 |
| Juven | Juvenile tuber | 0.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.20 | |
| Mother_Juven | Mother tuber of Juvenile | 1.63 |