Detail information of GWHGAAEX007468/evm.TU.scaffold_2.321
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743835680|ref|XP_010935885.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9LXE8|PP386_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g15340, mitochondrial (Precursor) |
| trEMBL | tr|M5WYM3|M5WYM3_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ18769.1} |
| trEMBL | tr|M5WYM3|M5WYM3_PRUPE | 9.00E-13 | Uncharacterized protein {ECO:0000313|EMBL:EMJ18769.1} |
| TAIR | AT5G15340 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 12918953 | 12922585 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007468
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 79 | 105 | 0.00093 |
| PF01535.19 | PPR | 150 | 172 | 0.011 |
| PF01535.19 | PPR | 209 | 234 | 0.074 |
| PF01535.19 | PPR | 290 | 313 | 0.0047 |
| PF13041.5 | PPR_2 | 316 | 364 | 4.70E-12 |
| PF01535.19 | PPR | 387 | 411 | 0.0074 |
| PF14432.5 | DYW_deaminase | 485 | 618 | 1.30E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.680 |
| SRR2545915 | Juvenile tuber | 1.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.640 |
| SRR5643514 | five period of Gastrodia elata | 1.820 | |
| SRR5643515 | five period of Gastrodia elata | 1.510 | |
| SRR5643524 | five period of Gastrodia elata | 1.500 | |
| SRR5643525 | five period of Gastrodia elata | 1.010 | |
| SRR5643528 | five period of Gastrodia elata | 0.560 | |
| SRR5643658 | five period of Gastrodia elata | 1.250 | |
| SRR5643659 | five period of Gastrodia elata | 2.310 | |
| SRR5643660 | five period of Gastrodia elata | 2.230 | |
| SRR5643661 | five period of Gastrodia elata | 3.250 | |
| SRR5643662 | five period of Gastrodia elata | 2.000 | |
| SRR5643663 | five period of Gastrodia elata | 1.720 | |
| SRR5643664 | five period of Gastrodia elata | 2.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.47 |
| Juven | Juvenile tuber | 0.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.68 | |
| Mother_Juven | Mother tuber of Juvenile | 0.50 |