Gene detail

Detail information of GWHGAAEX007478/evm.TU.scaffold_2.333

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|703095936\|ref\|XP_010095678.1\|	2.03E-75	putative transcription factor PosF21 [Morus notabilis]
Swissprot	tr\|Q04088\|POF21_ARATH	3.00E-38	Probable transcription factor PosF21
trEMBL	tr\|W9QZU9\|W9QZU9_9ROSA	8.00E-76	Putative transcription factor PosF21 {ECO:0000313\|EMBL:EXB61817.1}
TAIR	AT4G38900	4.00E-56	Basic-leucine zipper (bZIP) transcription factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	13141882	13158302	-

Transcript Sequence
>GWHTAAEX007478 AAATCCGAGTTACTAGAGAGCACGCTGCACTCTGCGCACTCTGCGCACTGCGGCACCGACACGGATCTGACGCCATTTCTTCGTCTCCGCAAATTCCCGACAGCAGCATTCCGCGGAGAACTCGGAAGAGCAGAAAATAGCGAATCACCCCATTGCTGTTAGCATCTGATCGATTCCTCTCTCCCTCACTTCGCACTTTGAATCCCTTCGTCATCATCATCATCATCATCATCCATGGAAAGATCGACGATGCCCTACTCTCAGGCGGCCGGAAGCCATCACCATCAATCTCTTTCTCAACCATGTAATCTCTTCTTCAATGACTCTCTGCCGCCGTTGAGTCCCTCCCCTTGCAGCAAGGCCTCCCCGACTTCCTCCATTTCCGATTCCGCCGACCCTGGAATGGTCGCTTCCGGCGGTGGGCTTCCACCTCGCAAGATCCACCGTCGATCTTGCAGCGAGCTTTCACCGACAGTGAAGCCCTCGGATTTAGTCTCGGCTAGGAAATCGGAAGGTAATGCGGGCGGCGATGATCTTTGCGATGTGTTTTTCAATTTGGGTGGGTTTGGAATGGCGGAATATTTGGATTATTTTCGTGATGAAATGGTGGATAAAAAGGGGAATGGAAACAGTAAGAACGGAGCTTATAGCAACGAGAGCGAGGCGGAGAGCTGCTCCATCGACTGTGCTATGGTCACCGAATATTCCCTGGATGATAGACCTGCGCGGCTTGTCAGAGGCATTTCTATGGATGAATTGAACTCTGAAGGAAGGATGAACTTTTGTGAGGGTTCGCATTTTAGGGTTTCGCCCTCTCCTGGGTCTAATAGAAGCCAGAATTCTGAATGTGTTTCGTTCGTTGGAAGCTTTAGCTTGGAGTTTGGGAGAGGGGAATTCAGCGGGGTTGAGCTCAAGAAAATTATGGCGGATAAAAGGCTGGAGGAAATTGCTCTCGCTGATCCAAAACGTGCAAAAAGGATTTTGGCAAATCGTTTCTCTGCTGCTCGTTCCAAGGAACGAAAGGTGAGGTATATTTCAGAGTTGGAAATCAAAGTTCAAACACTGCAGACTGAAGCAACGACATTGTCAACTCAGCTGACGTTGCTGCAGAGCGACTCGACCGGGCTTGCTAGTCAGAACAATGAATTAAAAGATAGGCTCCAAGCCATGGAACAACAGGCACAACTAAGAGACGTCTTTGTCTCAGCTTCACATTTACTGCGAAGAGGCTGTGTGATTCGCCGAGGATACAAGAACTCTTGCAAAAGCCGAAGCAGCGAAGTGGCGAGAAGTTATGCTTCTTTTGGGCTCATTACTTCAAACGCTATCTTCTGGCGAGAATCGAATCTTCGCCGAAGACTCTATCTTTAGGCAATTGGAACAAAGCTTCAGTCGTTCAAGCTTTGGAACAGCAATCATATCCTGCTATCATCATAGCTTTTCCTTCTCCAGCCGGTAAAGTTTTCCCGCTTCTACTTTTCAATTTTTCTCATTTTGCCCTTTTTAATCTTCAGCTTCAAATTCGATTTTTCAGAAATTCATTTTTTTGGAGCCTTGCTTTGTTGTTATTAGGTATTTGCTTGAATGCACTCATATTTGGATATTTACACGACATTTTTTTGTTCTTGTAGAGCCTTACTTTGTTTGTGGTAATTGCTTGCAAGGCATTAGAATTTGGGTATTTGCAGATCTAACATGCAAAAGATATACCTCTCCATTTTTTTAGCAAGGGCTGAGAACCTGAGGAAAACGGAATGTCTTTCCTCTCAAAATTCTAGGGTTCTTCTTGGAAGGAAATCAGGTGAACCGATTTCGTTTATCATTTTTTTCTTTTTCTTTTTTCTTAGTGTTTTTTTTCAAAGAATGCTTTTAAATTGAAGAGTAAATCAATTTAAAGATTACAGTGATTTGTTGCCCCTTTGTAAAATTTTCTTGCAATGCAATAGCAGTTTATTGTAATATTACAAAAATTATTTTAAGAAAATTTGAACTTTGTTCATGTCAACTTATTGAAAATGTAATAAAAAAATATTTATTTCGATTATATTTTCTACAGTAACATGGTAGGAGGTCTCCGTAACATGATAGGAGGTTTGTGCTTTTTTAGTTGTGAATTCTAAATAATAAATTGTGTGAATAAAAACTAAAATAAGAAAATTCAACAAATGTGGAAGAGCAAGGCCAAGAGACGATTCAAATACTTAATCAGCTAAGGAGAATGCTTTTACCTGAAGTTCAAGCTTACATGTTTATGAGTTTCATCTTTTATCTAAGCAAAATAATTTTTTTTAATATTCTTTTTCTTTCAATACATGAATG

Network for GWHGAAEX007478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.20	bZIP_1	244	302	2.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.040
SRP064423	SRR2545915	Juvenile tuber	3.630
SRP108465	SRR5643513	five period of Gastrodia elata	4.170
	SRR5643514	five period of Gastrodia elata	5.730
	SRR5643515	five period of Gastrodia elata	5.890
	SRR5643524	five period of Gastrodia elata	5.330
	SRR5643525	five period of Gastrodia elata	3.640
	SRR5643528	five period of Gastrodia elata	2.220
	SRR5643658	five period of Gastrodia elata	2.990
	SRR5643659	five period of Gastrodia elata	8.780
	SRR5643660	five period of Gastrodia elata	8.390
	SRR5643661	five period of Gastrodia elata	7.910
	SRR5643662	five period of Gastrodia elata	7.270
	SRR5643663	five period of Gastrodia elata	8.540
	SRR5643664	five period of Gastrodia elata	8.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.330
SRP279888	Gastro	Gastrodia elata tuber	7.12
	Juven	Juvenile tuber	7.15
	Mother_Gastro	Mother tuber of Gastrodia elata	1.73
	Mother_Juven	Mother tuber of Juvenile	3.49