Detail information of GWHGAAEX007490/evm.TU.scaffold_2.346


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|336176705|ref|YP_004582080.1|1.00E-631-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata]
KOGKOG025601-aminocyclopropane-1-carboxylate synthase, and related proteins
nrgi|379317180|gb|ACZ54911.3|01-aminocyclopropane-1-carboxylic acid synthase [Narcissus tazetta var. chinensis]
Swissprottr|P31531|1A1C_SOYBN01-aminocyclopropane-1-carboxylate synthase
trEMBLtr|D2K6M8|D2K6M8_NARTA01-aminocyclopropane-1-carboxylic acid synthase {ECO:0000313|EMBL:ACZ54911.3}
TAIRAT1G0148001-amino-cyclopropane-1-carboxylate synthase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101347144613474597+
Transcript Sequence

Network for GWHGAAEX007490

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00155.20Aminotran_1_2464282.80E-92
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20772ACS1_2_6 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Cysteine and methionine metabolismmap00270
MAPK signaling pathway - plantmap04016

Gene Ontology

GO term OntologyName
GO:0009058Biological Processbiosynthetic process
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.460
SRR2545915Juvenile tuber1.550
SRP108465SRR5643513five period of Gastrodia elata2.380
SRR5643514five period of Gastrodia elata0.910
SRR5643515five period of Gastrodia elata39.320
SRR5643524five period of Gastrodia elata1.910
SRR5643525five period of Gastrodia elata22.860
SRR5643528five period of Gastrodia elata46.880
SRR5643658five period of Gastrodia elata16.870
SRR5643659five period of Gastrodia elata22.130
SRR5643660five period of Gastrodia elata16.950
SRR5643661five period of Gastrodia elata16.780
SRR5643662five period of Gastrodia elata65.560
SRR5643663five period of Gastrodia elata19.340
SRR5643664five period of Gastrodia elata69.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.400
SRR6049655Rhizomagastrodiae_C368-T10_good_12.990
SRR6049656Rhizomagastrodiae_C368-T07_good_14.800
SRR6049657Rhizomagastrodiae_C368-T07_good_14.500
SRR6049658Rhizomagastrodiae_C368-T04_good_16.540
SRR6049659Rhizomagastrodiae_C368-T04_good_16.970
SRR6049660Rhizomagastrodiae_C368-T01_good_137.370
SRR6049661Rhizomagastrodiae_C368-T04_good_19.530
SRR6049662Rhizomagastrodiae_C368-T01_good_17.250
SRR6049663Rhizomagastrodiae_C368-T01_good_139.450
SRR6049664Rhizomagastrodiae_C368-T10_good_17.040
SRR6049665Rhizomagastrodiae_C368-T10_good_17.040
SRP279888GastroGastrodia elata tuber 1.54
JuvenJuvenile tuber0.33
Mother_GastroMother tuber of Gastrodia elata 721.49
Mother_JuvenMother tuber of Juvenile 58.97