Gene detail

Detail information of GWHGAAEX007491/evm.TU.scaffold_2.347

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743777397\|ref\|XP_010919130.1\|	PREDICTED: DNA-directed primase/polymerase protein [Elaeis guineensis]
trEMBL	tr\|I1QAL6\|I1QAL6_ORYGL	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA07G0115800.1}
TAIR	AT5G52800	DNA primases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	13516039	13581324	+

Transcript Sequence
>GWHTAAEX007491 ATGGAGTATGATCCGAAAGACGACGTCGATAGGCTTTTTACTTGTTTTAAGTGCGGAGTTTCGCCTCCCCCATCCGCACTGCAGGAGATAAAAAGCAATGCGCGAAAACCTTCAAGATCGACGGACGGAGAGTTTCCTGTGGTTGGTGATAAAGAAGCGCTTAGCTGTTCCAAGCAAGTGGAGAATACTTCCAGGGAGAGAATGAAAAGGGGTTCATCAGCAACTGCTGCAATAAAATTTCGAAGCGGCAATCAGATCTCTCCAGTTGTCTTCTATAGTTCGCCACATGGTGTTCCCGTTAAGAAACCATCAAGAATTCTGAAATTATTACAGGAAATTTGTGTTGATCTTAGTGAAGAGAATGCCTTGATCTCTAGGGATGGCGTCTGGGCTACATTCCCTAGGCAACAAGAGGCTGCTAGGTTTTCCAAAACACACAAAAATAGTAGTGTGTTTTGTTATCAAGATCATTTGACTGGACAAAGAAGGTTCCTTGTGTCTACCTACAGTGAGTTTTGGAGAAGGTATAAAAATATGAATTCCAAATTACGACATCATTATGAAGTTATTCAAGAGGGTCAGCCTTGTCACCTGTATTTTGATCTTGAATTTAATAAGAGACTCAATATTGACAGAAATGTAGATGAGATGGTGGACATTTTGACGTCTATCACTTTAACTGCTATATCCGAGAAATATTCTATTCAAGCAAATCAGGAGTGTGTTGTAGAGCTAGATTCTTCCACTGAGGAAAAGTTTTCACGTCATTTGATCATTCGTCTTCCAAAGATCGCTTTTAAAGATAACTCACATGTTGGTTCATTTGTTTTTGAGATTTGCTCACGAATTGCCAATTTACGGGAAAGCAATCCTCAAGTTAATAAATTATATATCAACAAAGATTCTTACCCTTCCGATTTTGCTGATCACCTTTTTCTTGATAGTGCTGTATACTCTCGTAACCGCAGCTTTCGTTTGATATTCTCTTCAAAGGCTGGGAAGAGCTCTTTTCTGTTGCCTACTGGACGCTTTAAAAATAAAAACATGAGTGAACATCAATTGTTTTTGGAATCTCTTATATGTAGAATGGATGAAGATTGTGAGAAAATTTTGATATGCAAAATGGATCTAGATTACTTGAAAACTCTTTCTTTTGAAACTGAGGTTCATGCAAAACATCAAAAATATTCTTGGGATGTTAATTTCAAAGATAGCAGAAGTGACTTTATTAGCAATTACATTATAGGGGAATCGCCCTTTCTTGCTTTGGACACATTTGTGGAATCCATTTCATCAATTGGAAGTACTTCAGGAAAAATTCAAAGCTGGTTTTGGTTTTCAGCATATGGCTTGATGGTCTACAACATGTCTAGAAGTAGATATTGTGAGCGCATAGGAAGGGAACATAAAAGCAATCACGTAATGTATGTGGTGGACTTCCAGAAGGCAGGCTACTTCCAGAAATGTCATGATCCAGATTGTAGAGGCTATCGCTCTCCTTTTCGCCCATTACCATGGGATGTATTACCTGAAAGATCCATGCTATCAAATTTGAGTCAAATAGAAACTTACAAGGATGTTGTAAATATTGAAATTGATCTCCAGGTTTGCGATACTAACATTACTGCATTTGAAAGCGAGCAGCTAAGGGATTGTTGTACAGACATGAGCTGGTGGAATGAAGCTGTAAAATTTGCCGAATGTATTGAGAATATGGGAAATGTTTCTGATTTCAACGTATTGGATGCGGATTTTATGGGTGATGACTGCGTCCAGCCACAAGTCGACTAGCAAACCAGTAATCATATTTTGGCCAAATTACATTTTCTAATTTGAATGAAGTGTATTACTTATTTTTAGGCATTTCTTGAATTTTATTGAAAAAATATAGAATTTAAATGTTTGATATGCTATTATTTCAAAATTATATTATAGAAATAATTTATCATTCTACATATTCACAAACTCTTCTGTAGCAAATTGTTTTTACAAGCATTG

Network for GWHGAAEX007491

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03121.14	Herpes_UL52	445	506	1.90E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.410
SRP064423	SRR2545915	Juvenile tuber	5.780
SRP108465	SRR5643513	five period of Gastrodia elata	3.750
	SRR5643514	five period of Gastrodia elata	4.470
	SRR5643515	five period of Gastrodia elata	3.460
	SRR5643524	five period of Gastrodia elata	4.060
	SRR5643525	five period of Gastrodia elata	4.950
	SRR5643528	five period of Gastrodia elata	2.700
	SRR5643658	five period of Gastrodia elata	3.530
	SRR5643659	five period of Gastrodia elata	5.590
	SRR5643660	five period of Gastrodia elata	4.490
	SRR5643661	five period of Gastrodia elata	4.650
	SRR5643662	five period of Gastrodia elata	4.700
	SRR5643663	five period of Gastrodia elata	6.450
	SRR5643664	five period of Gastrodia elata	5.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.530
SRP279888	Gastro	Gastrodia elata tuber	7.95
	Juven	Juvenile tuber	5.19
	Mother_Gastro	Mother tuber of Gastrodia elata	6.33
	Mother_Juven	Mother tuber of Juvenile	5.67