Detail information of GWHGAAEX007492/evm.TU.scaffold_2.348
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|260063492|ref|YP_003196572.1| | 1.00E-77 | caax prenyl protease 1 [Robiginitalea biformata HTCC2501] |
| KOG | KOG2719 | 0 | Metalloprotease |
| nr | gi|672179870|ref|XP_008810111.1| | 0 | PREDICTED: CAAX prenyl protease 1 homolog [Phoenix dactylifera] |
| Swissprot | tr|Q8RX88|FACE1_ARATH | 0 | CAAX prenyl protease 1 homolog |
| trEMBL | tr|D7UCF7|D7UCF7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI40422.3} |
| TAIR | AT4G01320 | 0 | Peptidase family M48 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 13592528 | 13653027 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007492
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16491.4 | Peptidase_M48_N | 27 | 210 | 3.00E-66 |
| PF01435.17 | Peptidase_M48 | 213 | 417 | 1.90E-52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06013 | STE24 | Biosynthesis of secondary metabolites | map01110 |
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071586 | Biological Process | CAAX-box protein processing |
| GO:0006508 | Biological Process | proteolysis |
| GO:0008233 | Molecular Function | peptidase activity |
| GO:0004222 | Molecular Function | metalloendopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.190 |
| SRR2545915 | Juvenile tuber | 73.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 49.810 |
| SRR5643514 | five period of Gastrodia elata | 55.970 | |
| SRR5643515 | five period of Gastrodia elata | 55.300 | |
| SRR5643524 | five period of Gastrodia elata | 58.070 | |
| SRR5643525 | five period of Gastrodia elata | 40.940 | |
| SRR5643528 | five period of Gastrodia elata | 40.530 | |
| SRR5643658 | five period of Gastrodia elata | 43.910 | |
| SRR5643659 | five period of Gastrodia elata | 37.410 | |
| SRR5643660 | five period of Gastrodia elata | 41.090 | |
| SRR5643661 | five period of Gastrodia elata | 49.920 | |
| SRR5643662 | five period of Gastrodia elata | 36.770 | |
| SRR5643663 | five period of Gastrodia elata | 47.510 | |
| SRR5643664 | five period of Gastrodia elata | 38.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 74.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 59.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 51.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 53.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 54.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 77.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 75.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 75.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.13 |
| Juven | Juvenile tuber | 43.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 40.26 | |
| Mother_Juven | Mother tuber of Juvenile | 45.77 |