Detail information of GWHGAAEX007493/evm.TU.scaffold_2.349
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-110 | FOG: PPR repeat |
| nr | gi|743777944|ref|XP_010919414.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At3g01580 [Elaeis guineensis] |
| Swissprot | tr|Q7Y211|PP285_ARATH | 1.00E-110 | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic (Precursor) |
| trEMBL | tr|A0A096UDX6|A0A096UDX6_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM5G862936_P01} |
| TAIR | AT3G57430 | 1.00E-110 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 13653931 | 13657929 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007493
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 65 | 92 | 0.11 |
| PF01535.19 | PPR | 94 | 121 | 1.20E-05 |
| PF01535.19 | PPR | 166 | 188 | 0.4 |
| PF01535.19 | PPR | 198 | 226 | 0.03 |
| PF01535.19 | PPR | 268 | 289 | 0.061 |
| PF01535.19 | PPR | 341 | 367 | 1.1 |
| PF01535.19 | PPR | 369 | 397 | 5.40E-05 |
| PF01535.19 | PPR | 445 | 468 | 0.0058 |
| PF01535.19 | PPR | 473 | 503 | 1.90E-05 |
| PF01535.19 | PPR | 547 | 570 | 1.1 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.320 |
| SRR2545915 | Juvenile tuber | 1.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.200 |
| SRR5643514 | five period of Gastrodia elata | 1.860 | |
| SRR5643515 | five period of Gastrodia elata | 1.570 | |
| SRR5643524 | five period of Gastrodia elata | 1.970 | |
| SRR5643525 | five period of Gastrodia elata | 2.120 | |
| SRR5643528 | five period of Gastrodia elata | 1.430 | |
| SRR5643658 | five period of Gastrodia elata | 2.530 | |
| SRR5643659 | five period of Gastrodia elata | 0.810 | |
| SRR5643660 | five period of Gastrodia elata | 1.030 | |
| SRR5643661 | five period of Gastrodia elata | 1.260 | |
| SRR5643662 | five period of Gastrodia elata | 1.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.570 | |
| SRR5643664 | five period of Gastrodia elata | 0.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.22 |
| Juven | Juvenile tuber | 1.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.95 | |
| Mother_Juven | Mother tuber of Juvenile | 0.57 |