Detail information of GWHGAAEX007494/evm.TU.scaffold_2.350
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379012008|ref|YP_005269820.1| | 1.00E-24 | serine/threonine-protein kinase PrkC [Acetobacterium woodii DSM 1030] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|720016992|ref|XP_010261327.1| | 0 | PREDICTED: probable serine/threonine-protein kinase At1g01540 [Nelumbo nucifera] |
| Swissprot | tr|Q3EDL4|Y1154_ARATH | 0 | Probable serine/threonine-protein kinase At1g01540 |
| trEMBL | tr|D7UCF8|D7UCF8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI40423.3} |
| TAIR | AT1G01540 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 13668365 | 13676928 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007494
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 162 | 428 | 2.10E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-V |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.640 |
| SRR2545915 | Juvenile tuber | 19.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.380 |
| SRR5643514 | five period of Gastrodia elata | 18.160 | |
| SRR5643515 | five period of Gastrodia elata | 16.770 | |
| SRR5643524 | five period of Gastrodia elata | 15.000 | |
| SRR5643525 | five period of Gastrodia elata | 7.050 | |
| SRR5643528 | five period of Gastrodia elata | 6.190 | |
| SRR5643658 | five period of Gastrodia elata | 8.780 | |
| SRR5643659 | five period of Gastrodia elata | 21.420 | |
| SRR5643660 | five period of Gastrodia elata | 19.150 | |
| SRR5643661 | five period of Gastrodia elata | 22.190 | |
| SRR5643662 | five period of Gastrodia elata | 13.100 | |
| SRR5643663 | five period of Gastrodia elata | 17.820 | |
| SRR5643664 | five period of Gastrodia elata | 16.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.79 |
| Juven | Juvenile tuber | 14.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.94 | |
| Mother_Juven | Mother tuber of Juvenile | 5.92 |