Detail information of GWHGAAEX007501/evm.TU.scaffold_2.361


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08001.00E-49FOG: Predicted E3 ubiquitin ligase
nrgi|720063600|ref|XP_010275692.1|3.09E-57PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Nelumbo nucifera]
Swissprottr|Q9SUS5|RHA1B_ARATH8.00E-27E3 ubiquitin-protein ligase RHA1B
trEMBLtr|M0RVX6|M0RVX6_MUSAM7.00E-54Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P00680_001}
TAIRAT3G614601.00E-49brassinosteroid-responsive RING-H2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101380977013811570-
Transcript Sequence

Network for GWHGAAEX007501

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2921354.70E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.900
SRR2545915Juvenile tuber8.080
SRP108465SRR5643513five period of Gastrodia elata5.850
SRR5643514five period of Gastrodia elata13.740
SRR5643515five period of Gastrodia elata12.940
SRR5643524five period of Gastrodia elata9.570
SRR5643525five period of Gastrodia elata54.300
SRR5643528five period of Gastrodia elata25.500
SRR5643658five period of Gastrodia elata53.220
SRR5643659five period of Gastrodia elata89.640
SRR5643660five period of Gastrodia elata86.230
SRR5643661five period of Gastrodia elata102.620
SRR5643662five period of Gastrodia elata86.170
SRR5643663five period of Gastrodia elata89.480
SRR5643664five period of Gastrodia elata97.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.590
SRR6049655Rhizomagastrodiae_C368-T10_good_116.210
SRR6049656Rhizomagastrodiae_C368-T07_good_16.820
SRR6049657Rhizomagastrodiae_C368-T07_good_14.780
SRR6049658Rhizomagastrodiae_C368-T04_good_13.430
SRR6049659Rhizomagastrodiae_C368-T04_good_11.310
SRR6049660Rhizomagastrodiae_C368-T01_good_11.900
SRR6049661Rhizomagastrodiae_C368-T04_good_12.810
SRR6049662Rhizomagastrodiae_C368-T01_good_18.590
SRR6049663Rhizomagastrodiae_C368-T01_good_13.390
SRR6049664Rhizomagastrodiae_C368-T10_good_19.800
SRR6049665Rhizomagastrodiae_C368-T10_good_19.800
SRP279888GastroGastrodia elata tuber 143.62
JuvenJuvenile tuber4.85
Mother_GastroMother tuber of Gastrodia elata 12.74
Mother_JuvenMother tuber of Juvenile 3.54