Detail information of GWHGAAEX007508/evm.TU.scaffold_2.369
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2581 | 0 | 26S proteasome regulatory complex, subunit RPN3/PSMD3 |
| nr | gi|743779257|ref|XP_010920092.1| | 0 | PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Elaeis guineensis] |
| Swissprot | tr|Q06364|PSMD3_DAUCA | 0 | Probable 26S proteasome non-ATPase regulatory subunit 3 |
| trEMBL | tr|A0A067FPP8|A0A067FPP8_CITSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDO68110.1} |
| TAIR | AT1G20200 | 0 | PAM domain (PCI/PINT associated module) protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 14011752 | 14024436 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007508
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01399.26 | PCI | 311 | 416 | 6.50E-21 |
| PF08375.10 | Rpn3_C | 420 | 486 | 5.70E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03033 | PSMD3, RPN3 | Proteasome | map03050 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042176 | Biological Process | regulation of protein catabolic process |
| GO:0030234 | Molecular Function | enzyme regulator activity |
| GO:0000502 | Cellular Component | proteasome complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 47.240 |
| SRR2545915 | Juvenile tuber | 51.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 73.750 |
| SRR5643514 | five period of Gastrodia elata | 77.700 | |
| SRR5643515 | five period of Gastrodia elata | 70.770 | |
| SRR5643524 | five period of Gastrodia elata | 78.110 | |
| SRR5643525 | five period of Gastrodia elata | 63.840 | |
| SRR5643528 | five period of Gastrodia elata | 67.480 | |
| SRR5643658 | five period of Gastrodia elata | 67.410 | |
| SRR5643659 | five period of Gastrodia elata | 82.370 | |
| SRR5643660 | five period of Gastrodia elata | 92.340 | |
| SRR5643661 | five period of Gastrodia elata | 98.750 | |
| SRR5643662 | five period of Gastrodia elata | 78.730 | |
| SRR5643663 | five period of Gastrodia elata | 75.730 | |
| SRR5643664 | five period of Gastrodia elata | 80.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 83.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 82.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 86.610 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 80.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 84.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 85.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 81.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 85.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 106.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 100.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 101.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 101.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 63.70 |
| Juven | Juvenile tuber | 101.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 75.16 | |
| Mother_Juven | Mother tuber of Juvenile | 67.46 |