Detail information of GWHGAAEX007509/evm.TU.scaffold_2.370


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|296133380|ref|YP_003640627.1|8.00E-21translation initiation factor IF-3 [Thermincola potens JR]
nrgi|743779242|ref|XP_010920085.1|7.43E-82PREDICTED: uncharacterized protein LOC105044014 [Elaeis guineensis]
trEMBLtr|F2D3T1|F2D3T1_HORVD9.00E-63Predicted protein {ECO:0000313|EMBL:BAJ89752.1}
TAIRAT1G343601.00E-30translation initiation factor 3 (IF-3) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101402710014064670-
Transcript Sequence

Network for GWHGAAEX007509

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05198.15IF3_N921697.20E-19
PF00707.21IF3_C1832623.00E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006413Biological Processtranslational initiation
GO:0003743Molecular Functiontranslation initiation factor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.440
SRR2545915Juvenile tuber25.190
SRP108465SRR5643513five period of Gastrodia elata23.050
SRR5643514five period of Gastrodia elata20.970
SRR5643515five period of Gastrodia elata22.720
SRR5643524five period of Gastrodia elata20.960
SRR5643525five period of Gastrodia elata45.870
SRR5643528five period of Gastrodia elata42.650
SRR5643658five period of Gastrodia elata42.900
SRR5643659five period of Gastrodia elata31.810
SRR5643660five period of Gastrodia elata36.080
SRR5643661five period of Gastrodia elata32.240
SRR5643662five period of Gastrodia elata37.870
SRR5643663five period of Gastrodia elata34.140
SRR5643664five period of Gastrodia elata40.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.130
SRR6049655Rhizomagastrodiae_C368-T10_good_122.090
SRR6049656Rhizomagastrodiae_C368-T07_good_124.040
SRR6049657Rhizomagastrodiae_C368-T07_good_125.600
SRR6049658Rhizomagastrodiae_C368-T04_good_127.200
SRR6049659Rhizomagastrodiae_C368-T04_good_132.730
SRR6049660Rhizomagastrodiae_C368-T01_good_125.410
SRR6049661Rhizomagastrodiae_C368-T04_good_125.630
SRR6049662Rhizomagastrodiae_C368-T01_good_122.910
SRR6049663Rhizomagastrodiae_C368-T01_good_123.620
SRR6049664Rhizomagastrodiae_C368-T10_good_123.460
SRR6049665Rhizomagastrodiae_C368-T10_good_123.460
SRP279888GastroGastrodia elata tuber 34.26
JuvenJuvenile tuber46.08
Mother_GastroMother tuber of Gastrodia elata 32.57
Mother_JuvenMother tuber of Juvenile 49.73