Detail information of GWHGAAEX007514/evm.TU.scaffold_2.377
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428304331|ref|YP_007141156.1| | 3.00E-16 | WD40 repeat-containing protein [Crinalium epipsammum PCC 9333] |
| KOG | KOG0283 | 0 | WD40 repeat-containing protein |
| nr | gi|672133734|ref|XP_008790501.1| | 0 | PREDICTED: WD repeat-containing protein 44-like [Phoenix dactylifera] |
| Swissprot | tr|P49178|GBB_MAIZE | 2.00E-13 | Guanine nucleotide-binding protein subunit beta |
| trEMBL | tr|M0S0S6|M0S0S6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P17680_001} |
| TAIR | AT3G15470 | 0 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 14149557 | 14161135 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007514
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 357 | 388 | 0.00046 |
| PF00400.31 | WD40 | 469 | 503 | 1.20E-05 |
| PF00400.31 | WD40 | 509 | 546 | 0.00034 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.930 |
| SRR2545915 | Juvenile tuber | 24.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.980 |
| SRR5643514 | five period of Gastrodia elata | 18.430 | |
| SRR5643515 | five period of Gastrodia elata | 23.220 | |
| SRR5643524 | five period of Gastrodia elata | 19.740 | |
| SRR5643525 | five period of Gastrodia elata | 27.390 | |
| SRR5643528 | five period of Gastrodia elata | 14.110 | |
| SRR5643658 | five period of Gastrodia elata | 21.130 | |
| SRR5643659 | five period of Gastrodia elata | 32.960 | |
| SRR5643660 | five period of Gastrodia elata | 33.710 | |
| SRR5643661 | five period of Gastrodia elata | 32.290 | |
| SRR5643662 | five period of Gastrodia elata | 34.370 | |
| SRR5643663 | five period of Gastrodia elata | 32.400 | |
| SRR5643664 | five period of Gastrodia elata | 36.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 45.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 55.59 |
| Juven | Juvenile tuber | 53.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.12 | |
| Mother_Juven | Mother tuber of Juvenile | 42.30 |