Detail information of GWHGAAEX007515/evm.TU.scaffold_2.378


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19016.00E-80Uncharacterized high-glucose-regulated protein
nrgi|695033659|ref|XP_009404313.1|3.34E-98PREDICTED: YTH domain-containing family protein 1-like isoform X4 [Musa acuminata subsp. malaccensis]
Swissprottr|A9LNK9|CPSF_ARATH4.00E-0930-kDa cleavage and polyadenylation specificity factor 30 {ECO:0000303|PubMed:18479511}
trEMBLtr|F2DFW2|F2DFW2_HORVD3.00E-95Predicted protein {ECO:0000313|EMBL:BAJ93983.1}
TAIRAT1G792706.00E-80evolutionarily conserved C-terminal region 8

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101417503114194265-
Transcript Sequence

Network for GWHGAAEX007515

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04146.14YTH2043435.90E-36
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms40.270
SRR2545915Juvenile tuber42.180
SRP108465SRR5643513five period of Gastrodia elata22.120
SRR5643514five period of Gastrodia elata20.460
SRR5643515five period of Gastrodia elata19.160
SRR5643524five period of Gastrodia elata19.640
SRR5643525five period of Gastrodia elata19.620
SRR5643528five period of Gastrodia elata20.250
SRR5643658five period of Gastrodia elata16.330
SRR5643659five period of Gastrodia elata21.530
SRR5643660five period of Gastrodia elata18.710
SRR5643661five period of Gastrodia elata21.290
SRR5643662five period of Gastrodia elata18.130
SRR5643663five period of Gastrodia elata21.760
SRR5643664five period of Gastrodia elata16.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.830
SRR6049655Rhizomagastrodiae_C368-T10_good_130.800
SRR6049656Rhizomagastrodiae_C368-T07_good_122.150
SRR6049657Rhizomagastrodiae_C368-T07_good_117.980
SRR6049658Rhizomagastrodiae_C368-T04_good_115.460
SRR6049659Rhizomagastrodiae_C368-T04_good_114.040
SRR6049660Rhizomagastrodiae_C368-T01_good_119.570
SRR6049661Rhizomagastrodiae_C368-T04_good_117.560
SRR6049662Rhizomagastrodiae_C368-T01_good_123.210
SRR6049663Rhizomagastrodiae_C368-T01_good_118.950
SRR6049664Rhizomagastrodiae_C368-T10_good_125.980
SRR6049665Rhizomagastrodiae_C368-T10_good_125.980
SRP279888GastroGastrodia elata tuber 17.00
JuvenJuvenile tuber15.77
Mother_GastroMother tuber of Gastrodia elata 18.34
Mother_JuvenMother tuber of Juvenile 13.41