Detail information of GWHGAAEX007517/evm.TU.scaffold_2.383


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743834833|ref|XP_010935636.1|9.68E-91PREDICTED: clathrin light chain 2-like [Elaeis guineensis]
Swissprottr|Q9SKU1|CLC1_ARATH5.00E-63Clathrin light chain 1
trEMBLtr|I3S047|I3S047_MEDTR3.00E-76Uncharacterized protein {ECO:0000313|EMBL:AFK33639.1}
TAIRAT2G207602.00E-62Clathrin light chain protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101429926514304469+
Transcript Sequence

Network for GWHGAAEX007517

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01086.16Clathrin_lg_ch752601.20E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0006886Biological Processintracellular protein transport
GO:0005198Molecular Functionstructural molecule activity
GO:0030130Cellular Componentclathrin coat of trans-Golgi network vesicle
GO:0030132Cellular Componentclathrin coat of coated pit

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms46.790
SRR2545915Juvenile tuber90.800
SRP108465SRR5643513five period of Gastrodia elata87.600
SRR5643514five period of Gastrodia elata61.690
SRR5643515five period of Gastrodia elata185.370
SRR5643524five period of Gastrodia elata73.080
SRR5643525five period of Gastrodia elata203.820
SRR5643528five period of Gastrodia elata182.880
SRR5643658five period of Gastrodia elata130.500
SRR5643659five period of Gastrodia elata216.400
SRR5643660five period of Gastrodia elata196.650
SRR5643661five period of Gastrodia elata234.470
SRR5643662five period of Gastrodia elata250.260
SRR5643663five period of Gastrodia elata175.610
SRR5643664five period of Gastrodia elata334.710
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1155.620
SRR6049655Rhizomagastrodiae_C368-T10_good_197.790
SRR6049656Rhizomagastrodiae_C368-T07_good_1143.620
SRR6049657Rhizomagastrodiae_C368-T07_good_1120.450
SRR6049658Rhizomagastrodiae_C368-T04_good_191.670
SRR6049659Rhizomagastrodiae_C368-T04_good_160.810
SRR6049660Rhizomagastrodiae_C368-T01_good_1135.660
SRR6049661Rhizomagastrodiae_C368-T04_good_1116.890
SRR6049662Rhizomagastrodiae_C368-T01_good_1139.490
SRR6049663Rhizomagastrodiae_C368-T01_good_1168.240
SRR6049664Rhizomagastrodiae_C368-T10_good_1106.110
SRR6049665Rhizomagastrodiae_C368-T10_good_1106.110
SRP279888GastroGastrodia elata tuber 104.05
JuvenJuvenile tuber26.69
Mother_GastroMother tuber of Gastrodia elata 185.72
Mother_JuvenMother tuber of Juvenile 117.60