Gene detail

Detail information of GWHGAAEX007519/evm.TU.scaffold_2.386

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743776058\|ref\|XP_010918427.1\|	PREDICTED: mediator of RNA polymerase II transcription subunit 16 [Elaeis guineensis]
Swissprot	tr\|F4JGZ1\|MED16_ARATH	Mediator of RNA polymerase II transcription subunit 16
trEMBL	tr\|M0S945\|M0S945_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P18540_001}
TAIR	AT4G04920	sensitive to freezing 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	14348516	14387488	+

Transcript Sequence
>GWHTAAEX007519 ATGAATACCCCCACCCCTCCTCTCGCCGATGCAGAGCAGGTAGCGCAGGATGCTGAGAGCGCGCTGGAGCTGAAGGCTCTGGGCAAAGCATTGGCGGCGGAGGTGACGGAAGCGGCGGAAGCCGGCGGTGGAGTTGTGGAGATGGAGGTTGAGAAGAAGCTGCCGGAGGACAGCGATCGGCCGATGGATGCAGCGGACGGGCTTCCGGCGTCTCCAGCCACCGTGTTCCGTATTCGTCTCAAGCAGCCGCCTTCTAATCTTCAGCACAAGATGCGAGTTCCCGAGCTCTGCCGCAACTTCAGTGCTGTTGCTTGGTGCGACAGGGTGAATGCTATTGCCTGTGCGTCGGAGACATGTGCAAGAATCCCAAGCTCAAATGCAACTCTTCCCTTTTGGGTACCAATCCACATTTTAAACCCTGAGAGACCAACGGAATGTGCTGTATTTAATGTTAAAGCTGATTCCCCCCGAGATTTTGTTCAGTTTATTGAGTGGTCACCAAAGTCTTGCTCTCGTGCCCTATTGATAGCTAATTTTCATGGCAGAATCACCATATGGACTCAACCTTCACAGGGCCCTGTTCATCTTGTTCGGGATGTTAGTTGTTGGCAGTGCGAGCACGAATGGAGGCAAGATCTTGCCGTTGTCACTAAATGGTTATCTGGAATGACGGCGATTCGTTCCCTACCTTCAAACCTTAACAATTCTACTAATATGAAATTAACTTTTGAGGAAAGGTTCATTTCTCATCAGTCTCAAACTGCAGCAAGATGGCCAAACTTTCTTTGCGTTTGCTCAGTTTTCTCTTCTGGGTCCATCCAGCTTCATTGGGCACAATGGCCACCTGAAGATGGTCAGCCAAAGAAATGGTTTTCAACAAGCAAAGGTCTTCTTGGAGCTGGGCCAAGTGGTATTATGGCTGCAGATGTCATCGTTACTGAAACTGGGGTTATGCATGTTGCCGGTGTCCCTCTTGTCAACCCTTCTACTGTTGTTGTGTGGGAGGTTACACCTGGCCCTGGGAATGGCTTTCACGTGACTGCTAAGATAAATACAACTAGTTCAATTCCTACTCCATTGAGTCCTCCTTGCTGGACAGGTTTTGCACATCTTGCTGCATGTTTGTTTAATTTGCAAGAGTATATAACCTCTCAAGAAAAGCTAGGGAAGAGGCTAACAGATCAAGAGATAATTGAGGCTGCTCCACTACACTGTTCTCCAGTTTCTAATTTCTCTGCATATGTAAGTCCTGAAGCTGCTGCTCAATCTGCAGCAACCACTACATGGGGCTCTGGAGTAACTGCCGTGGCTTTTGATCCAACCAAGGGAGGGTCAACGATAGCAGTTGTGATAGTTGAAGGGCAGTACATGTCACCATATGATCCTGACGAGGGCCCTTCTATTACAGGATGGAGGGTCCAATGCTGGGAATCATCTCTTCAGCCTGTTGTTTTGCATCCAATTTTTGGAAATCCTTCTAGCTTTGGGGGGCAGCCCCCCATGCAAACCGTATGGTTAACTAGAGTTAACAAAAGCATTCCACCAACAGATGATTTAATGAATCCCCAACCATGCACTTCCTCATCAACTATCTCCGATGAGAGAAATTCATCAGACAGCAGCATTGAGAGGGCAAAGCGGCTTAGCTTTGATCCATATGACCTTCCAAGTGATATTAGGCAGTTAGCTCAAATTGTATATTCTGCTCATGGTGGTGAGGTTGCTGTTGCTTTTCTTCGTGGAGGAGTTCACATATTTTCTGGTGCAAATTTCAATCAACTTGATAGCTATCACATCAATGTTGGTTCAGCCATTGCTACTCCTGCTTTTTCATCAAGCAGCTGCTGCTTGGCTTCTGTTTGGCATGACACAAGCAAAGATCGCACGACCTTGAAGATATTTCGTGTTCTTCCTCCTGCTGTTTCTAACAATCAAGTTAAAGTTAACTGTGCCATATGGGAACGTGCTGTTGCAGACAGGTTCTGGTGGTGTCTTTTGTCAGGGGTAGACTGGTGGGATGCCATTGGTTGCACCCAGAGTGCTGCAGAAGATGGTATTGTCTCTTTGAACAGCGTGATTGCTGTGTTGGATGCTGACTTTCACGGTTTGCCTTCGAATCAACACCGACAACAATATGGCTCAAGCCTTGACAGAATAAAGTGCAGACTTTTGGAGGGCACAAATGCACAAGATGTCCGGGCCCTTGTTCTAGATATGCAAGCAAGATTGCTTTTAGATATGTTGGGCAAAGGAATTGAGTCTGCCCTTATTAATCCTGCCACATTGCTATCAGATCCTTGGCATGCTTCTGGTGAGACATTAGCAAGCATTGAGACTGACAGAATGGTCGTTGACCAAGCTTTGGTACCCAGCATCCAGGCTTATGTTGACGCTGTTTTGGACCTTGCGTCTCATTTCATAACACGCCTCCGTCGCTATGCGAGTTTTTGTCGTACTTTGGCAAGTCATGCTGTCGGGGCATCTTCTGGCACAGGCACTACTCGCAATATTGTGGCAAGCCCACCCCTCTCTTCATCACCTGCAACTAGTCAGGGCAGTCAAAGTGGTGCTTCTACCACAAGTGGAAACTCCCAAATGCAAGCATGGGTGCAAGGCGCCATTGCTAAGATTAGCAATAGTGCTGATGGTGGATCAACCACAACCACATCTAGCCCAATCAGCGGCCCGCCTTCCTTTATGCCAATTAGTATAAATACAGGGACGTTTCCAGGAACACCTGCTGTCAGGCTTATTGGAGATTGTCATTTTCTCCACAGATTATGCCAATTGCTCCTTTTTTCCCTGATTTTTCGACGAAGACATGCTGTGACAAAACCTGCCGTCAGTGCTGTTTCCAAAATAGAAGAAGGCCAAGCACGTTCGGGACAATTGGTAGTTGGTGCCAAAGGTCTTGAAGAAGGTCACCCTGGAAAGTCTACCAGAATAGGTTCTGGAAATGCGGGGCAAGGATACACATCTGAAGAGGTGAAGGTGCTGTTCCTGATACTGGTTGAGCTGTGCAGAAGGACAGCCCCTCTGCAGCACCCACTGCCAGCGTCTCAAGTTGGGTCGGGAAACATTAACATACGCTTGCATTACATAGACGGCAACTACACGGTGCTGCCCGAGGTGGTGGAGGCTTCTCTTGGCCCCCACATGCAGAATATGCCACGACCTCGAGGGGCGGATGCGGCGGGGCTGCTGTTGCGGGAGCTGGAGTTGCACCCGCCGGCAGAGGAGTGGCACAGGCGAAACATGTTTGGGGGGCCGTGGTGGGACCAGCCTGGGGACACGGGCCCCTTGGATGGTGCCTCCAAATCCAAGGGGGAGTACCCCCATTACTGCCTTTGGCCCAAGAAGAGGAGGATGTCTGAGAGGGATGCGGCATTCGGCCTCAAAACATCGCTCGGCTTGGGACCCTGCCTTGGAATCATGGGCTCCCGAAGGGACGTCGTCACTGCCACCTGGAGGGCTGGCCTCCAAGGCGTCTGGTACAAATGCGTCAGATGCCTGCGCCAGACCTGCGCATTTGCTCACCCGGGTTCTTCTCCCTCACCGCCCGATGATCGCGAGGCGTGGTGGATCAGCCGGTGGGCCCACGCCTGCCCGATGTGTGGCGGATCTTGGGTCCGTGTCGTTTAG

Network for GWHGAAEX007519

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX007519
MNTPTPPLADAEQVAQDAESALELKALGKALAAEVTEAAEAGGGVVEMEVEKKLPEDSDRPMDAADGLPASPATVFRIRLKQPPSNLQHKMRVPELCRNFSAVAWCDRVNAIACASETCARIPSSNATLPFWVPIHILNPERPTECAVFNVKADSPRDFVQFIEWSPKSCSRALLIANFHGRITIWTQPSQGPVHLVRDVSCWQCEHEWRQDLAVVTKWLSGMTAIRSLPSNLNNSTNMKLTFEERFISHQSQTAARWPNFLCVCSVFSSGSIQLHWAQWPPEDGQPKKWFSTSKGLLGAGPSGIMAADVIVTETGVMHVAGVPLVNPSTVVVWEVTPGPGNGFHVTAKINTTSSIPTPLSPPCWTGFAHLAACLFNLQEYITSQEKLGKRLTDQEIIEAAPLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTKGGSTIAVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGNPSSFGGQPPMQTVWLTRVNKSIPPTDDLMNPQPCTSSSTISDERNSSDSSIERAKRLSFDPYDLPSDIRQLAQIVYSAHGGEVAVAFLRGGVHIFSGANFNQLDSYHINVGSAIATPAFSSSSCCLASVWHDTSKDRTTLKIFRVLPPAVSNNQVKVNCAIWERAVADRFWWCLLSGVDWWDAIGCTQSAAEDGIVSLNSVIAVLDADFHGLPSNQHRQQYGSSLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPATLLSDPWHASGETLASIETDRMVVDQALVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGTGTTRNIVASPPLSSSPATSQGSQSGASTTSGNSQMQAWVQGAIAKISNSADGGSTTTTSSPISGPPSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFSLIFRRRHAVTKPAVSAVSKIEEGQARSGQLVVGAKGLEEGHPGKSTRIGSGNAGQGYTSEEVKVLFLILVELCRRTAPLQHPLPASQVGSGNINIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWWDQPGDTGPLDGASKSKGEYPHYCLWPKKRRMSERDAAFGLKTSLGLGPCLGIMGSRRDVVTATWRAGLQGVWYKCVRCLRQTCAFAHPGSSPSPPDDREAWWISRWAHACPMCGGSWVRVV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	160.800
SRP064423	SRR2545915	Juvenile tuber	157.380
SRP108465	SRR5643513	five period of Gastrodia elata	67.690
	SRR5643514	five period of Gastrodia elata	50.700
	SRR5643515	five period of Gastrodia elata	65.200
	SRR5643524	five period of Gastrodia elata	55.430
	SRR5643525	five period of Gastrodia elata	36.620
	SRR5643528	five period of Gastrodia elata	34.080
	SRR5643658	five period of Gastrodia elata	34.830
	SRR5643659	five period of Gastrodia elata	87.410
	SRR5643660	five period of Gastrodia elata	102.810
	SRR5643661	five period of Gastrodia elata	99.770
	SRR5643662	five period of Gastrodia elata	75.360
	SRR5643663	five period of Gastrodia elata	57.220
	SRR5643664	five period of Gastrodia elata	84.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	70.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	55.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	90.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	79.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	99.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	84.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	79.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	57.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	72.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.320
SRP279888	Gastro	Gastrodia elata tuber	77.16
	Juven	Juvenile tuber	81.60
	Mother_Gastro	Mother tuber of Gastrodia elata	92.46
	Mother_Juven	Mother tuber of Juvenile	70.54