Gene detail

Detail information of GWHGAAEX007523/evm.TU.scaffold_2.391

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|337751269\|ref\|YP_004645431.1\|	1.00E-42	hypothetical protein KNP414_07049 [Paenibacillus mucilaginosus KNP414]
KOG	KOG1426	0	FOG: RCC1 domain
nr	gi\|743868303\|ref\|XP_010905534.1\|	0	PREDICTED: ultraviolet-B receptor UVR8 [Elaeis guineensis]
Swissprot	tr\|Q9FN03\|UVR8_ARATH	2.00E-39	Ultraviolet-B receptor UVR8
trEMBL	tr\|M0RVR8\|M0RVR8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P00100_001}
TAIR	AT3G15430	0	Regulator of chromosome condensation (RCC1) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	14443800	14477765	-

Transcript Sequence
>GWHTAAEX007523 CTTAGTTCTGAGGTTTGATGTCCAGCTAGCTTCAGTGTCGACTTCAGGTGTAAAAAGGGGGCATGAGCCAGCCCAGTTCTTCTTCTCTTCTTCTGCTCTGCGCCTTTTTCATGTTCCTTGAACATCACCCTTCCTCCCTAAATTTCCTGACTTGCTTTGCATTTCGTGCGGATCTCTGATCAGAATTGTCGTTTTGATCTATTGCAAGATTTTACGGTTTCTTTTGTGGTTAATAATCTGTTTATGATGAGGTTCTGTTTCTTTCCCTTGCCTCGCTTGTTCCCTACTTCTTTTGTTTTATTCATCAACGCCTAATTGATTTCTGGTTAGATCCGATCCTTTGGCTGCATCTTGTGATTTTTTGTCCAGAACTCTTTTATACCTCGTTAGGCTCTTCTTGTATGCTTCTTCCACAAGACGCTTTCCTTTTTATTACACATTTTTCCTGTTAGCCCTTGAGGATTTGCTTCAGAGTGCGTTTGTGCGCCATGAGCATGATCGTTGGTTCTTTTGAATCGTTCGCTGTTGAGATTATGAGTGGATCGTCATCCTTTTGTATTGGTAAAATTAACCCAGGCTTTTAATCGTATTTTGGTGACAATGTTTCTTACTTTTTCAAGCGGGGGAAGTTCCACGGTTTAATCAGCCACAAGGAAGTAGGAAAGTGTAAAGGTGCAAGCTTGATATGGCAGACCGCAGTAGCGCCTTTTCTATACAAGAGCTCCCTGCTCATTTGATTCTTGAGATTTTGAGTTCAGGTCGTCTCAGCTCTGCAGATCTTGCTTCCTTAGAGGCAACATGCCGAATGTTCAGTGGAAGACATGGGGCCTGTCCTGATAAATTTCCTTCCATGGTTGAATTCGCTGCATTTCAACTCTGTGAGAGTCACCTGATATTCGCTTCTTTGCCTCAACGCTCAAGGAAGGACCTTTTTGATCGTTGTGGTGAGAATTGGAAGAAGGTCCTTAGATTCCTGCAATCAGTAGAACAATCTTCAGGCACTGCCAAAACGTCAACAGGCCGTATGCAAGTAACCACAGGAAGATATCATACACTCCTTATCCATGATTCTTATGTCTACTCGTGTGGATCCAGTTTGTGTGGTGTGCTTGGTCATGGTCAAAACACAACACAGTGTGTGACATTTAGCCGTATTAATTTCCCTACACTATCCCGTGTCATCCACATGTCTGCATCTCACAACCATGCTGCTTTTGTCATGGAGTCAGGAGAGGTTCTCACCTGCGGTGATAATTCATCATTTTGCTGTGGTCATGGAGAAGTGCGACGTGCAATTTTCAGGCCTACTGTCATTGAATCTCTTCGGGGGATCCCATGCAAACAGGTTGCCACTGGTCTTAATTTTACCACAATTCTTACAACTAAAGGTGATGTATATACCTGTGGAAGCAACACACATGGGCAGCTTGGCCACGGAGACAATACTGACTGCCCCGCTCCTACAAAGGTTGAATCGCTCGGGTGTGCTGGCCGCATTGTTCAAGTTGCTGCCAGTGCAAGCTACACCTTTGCTTTAACGAATGATGGAACTGTTTATTCTTTCGGTTCATACTCAAATTTCTGCCTTGGCCATGGAGTCCAGCATGATGAGCTTCTTCCTAGGCCCATGGAATCGTTCAAGAGGAAAAATATTCATGTGGTACGGGTATCCACTGGGGATGAGCATGCGGTGGCACTAGATTCCAATGGATTTGTCTATACTTGGGGAAGAGGATATTGTGGGGCTCTAGGACACGGAGATGAGAATGATAAGACTAGTCCAGAACTCCTAAGCAGCCTAAAGGGGCATCTGGCTGTACAGGTTTGTGCGAGGAAGAGAAAAACTTTTGTTCTGACAGATGAGGGCTCCGTCTTTGCCTTTGGATGGATGGGCTTTGGCAGCTTAGGCTTCTCGGATCGCGGGTGCTCAGACAAAGTAATGAGGCCGCAGATCCTCGATAATCTGCGGCCTCATTATGTCTCCCAAATCAGCACCGGCTTGTATCACACTGTTGCTGTGACAAACAGGGGGCTGGTTTTTGGGTTTGGGGATAATGAGAGGGCGCAACTAGGCCATGAACGGCTGAGGGGAAGCTTTCAGCCAACTGAAATCATGCTGCGGCCAACAATGGAAGATTTGGCAATAGCCGCTCAGAGTGGATGAGGTACACTTTCTTCAGCTTCTGTTAGAGTCAGCTTTGTATTTGCTATTGTTACTGTTGCTATCCTATATTGCTCATATTTACCCTGATGTCACCTTGGGTGCGTACATATATAACCCAATCTTTGATTTTCTTACAGAAATATTACTTAACCTTAAGATCCCCTCTCTTTGTACCTATCGAAATGATTTAAATGGGATGATATTTAATTGAAATTTAAGCAATAAATTGAAATTTTTTTAGAAACAGTTGAATTCTATAAATAATTCAACTATGTTATAGTCAATAATTCAACATGCTGATTGGTATCACCTTATTTCGTTGTTTTGGCACAGCTGATCTCTGCAATCCCAA

Network for GWHGAAEX007523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00415.17	RCC1	181	230	0.0001
PF00415.17	RCC1	234	284	7.70E-14
PF00415.17	RCC1	287	338	5.50E-09
PF00415.17	RCC1	341	382	2.90E-07
PF13540.5	RCC1_2	432	461	2.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.600
SRP064423	SRR2545915	Juvenile tuber	11.140
SRP108465	SRR5643513	five period of Gastrodia elata	10.380
	SRR5643514	five period of Gastrodia elata	10.720
	SRR5643515	five period of Gastrodia elata	11.500
	SRR5643524	five period of Gastrodia elata	10.610
	SRR5643525	five period of Gastrodia elata	14.500
	SRR5643528	five period of Gastrodia elata	14.250
	SRR5643658	five period of Gastrodia elata	14.610
	SRR5643659	five period of Gastrodia elata	8.130
	SRR5643660	five period of Gastrodia elata	8.480
	SRR5643661	five period of Gastrodia elata	8.290
	SRR5643662	five period of Gastrodia elata	8.400
	SRR5643663	five period of Gastrodia elata	8.390
	SRR5643664	five period of Gastrodia elata	8.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.940
SRP279888	Gastro	Gastrodia elata tuber	9.38
	Juven	Juvenile tuber	13.61
	Mother_Gastro	Mother tuber of Gastrodia elata	22.32
	Mother_Juven	Mother tuber of Juvenile	22.93