Gene detail

Detail information of GWHGAAEX007524/evm.TU.scaffold_2.392

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|221632107\|ref\|YP_002521328.1\|	7.00E-112	putative fructokinase [Thermomicrobium roseum DSM 5159]
KOG	KOG2855	1.00E-178	Ribokinase
nr	gi\|694427328\|ref\|XP_009341299.1\|	0	PREDICTED: fructokinase-1-like, partial [Pyrus x bretschneideri]
Swissprot	tr\|Q9FLH8\|SCRK7_ARATH	3.00E-179	Probable fructokinase-7
trEMBL	tr\|A0A068UK50\|A0A068UK50_COFCA	0	Coffea canephora
TAIR	AT5G51830	1.00E-178	pfkB-like carbohydrate kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	14492276	14497508	-

Transcript Sequence
>GWHTAAEX007524 GTAAGAGTTCAGAAGCGAGAGATTTCTGTTATACTGCTGTGCTGCTAATATCGCTGCAAACTAATTGCATTTTTAGATGGAGTTAATTTGGATACAAGCGTGCATAATCTTGCTGTTGATAGTGGTTTTGTCAGAAATATCGGCAGCTTGTTCGTGGTTGAAATTTCTTATCCTCTGTTAGAGCAGCAGTCGACCTCTACATGCTTGGTGCAGGCCTAAGGCATTCGCGAGAGCGATAGCGGAAAGGTTGTCGCGGTGCAATCGGGTCGGTTGATGCTGTGGAAACAGGAACTCCTGTAACAGTCCCCTAAAACATATGATATCAGTGGTTATTGTAGCGGACGCTCGGTATTCAGCTTCGCTGGAGGATCTGGCAAACAATGCTTATTGAAAGAATCACTAAAGTTTCTCATAATAATTAATAAAATAAGGAAAAGAATTGAGACAGTGTTAGATATGTATTATGTATGAATGATTAGATGATGGGTTGCCACATTTGCAGGAAATTCAACATGGATTATCCCGAGTCAGCAACCAGGAAAAGCTCCTCCTCTGTTGGGCATTTCATCAAACAGCTGGCAGCGCCGAGAAAAAATAATCTTCGCGAAACAATGCGAGCCTCACAAATTTGGCAACAGCCAAAATCCGTTACTTTTTCTCACCCCCTCCCTCATCTATTTTTATATAATTAAATATCCGATATTTGAGCGCCGAGGGGGGGTGGGGTGTTCTCTCTCGCTAGCTAGCATGGCGAAGAACGATTGCGGGAGGGAGAAAGGCGGAGAGAAGCCACCCCTCATTCTCTGCTTCGGCGAGATGCTCATAGACTTCGTTCCCACCGTCTCCGGCGCTTCGCTGGCCGACGCGCCGGCATTCAAGAAGGCTGCCGGAGGAGCTCCGGCGAACGTCGCCGTCGGCATCGCCAGGCTCGGCGGCTCTTCCGCTTTCATCGGCAAGGTTGGGCAGGACGAATTCGGGCACATGCTATCCAACATCCTGAAGGACAACAATGTCGATAACTCCGGCGTCCGCTTCGACTCCGGCGCAAGAACAGCCCTTGCCTTTGTCACTCTCAGATCCGACGGCGAGCGCGAATTCATGTTCTACCGACACCCTAGCGCCGACATGCTCCTCCATGAATCCGAGCTCGATGTTCATCTCATCAACAAGGGATCCATCTTTCACTACGGCTCCATTAGCATGATCGAAGAGCCGTGCAGATCAACTCACCTTGCCGCTCTTAAGATGGCTAAGAAAGCAGGGCTCATTCTCTCGTATGATCCTAATCTGCGACTCCCTCTCTGGCCTTCCGCAGATGCGGCCCGTGAAGGCATAAAAGGCATTTGGGATTACGCAGATTTAATAAAGGTAAGTGAGGAGGAGATATCATTCTTGACTGGAGGTGAAGATCCTTATAGTGATGAGGTTGTGTATAATAGGCTTTTTCACCCCAATCTCAAGCTTCTAGTTGTCACAGAAGGGCAAGATGGCTGCAGATACTATACTAAGAACTTTCATGGGAGAGTTGGAGGGTTTAAGGTTAAAGCTGTGGACACTACTGGTGCAGGTGATTCCTTTGTAAGTGGGTTATTAATTCATATGGCGTCAAATCATGATCTATACAAGGATGAGAAGAAGCTAAAGGAAGCCCTGACTTTTGCTAATGCATGCGGCGCAATCACAGTCACTGAGAGGGGAGCAATTCCTTCTCTTCCCACCAAAGATGCAGTCCTTGATTTCGTTTCCAAAGGCTGTGAAAAACCCCAGTGTTTGTGTGCTATTTCTTGACTCAATACAAAGGATATATACACCGTATATACATCTTGGCTAACATGTCTCCTGTAGCGAGGGCCAAAACTGGCAGTTTTTATGTTTTGTGACCAATTCAATTTATTATTGATTCTTTTTTATGACGATCTACTGAAATTATTTCATAGTATGATTAATTATAAGTTTGTGTTTGCATACCTTTTAATAAAATAATGATAATTGATGGA

Network for GWHGAAEX007524

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00294.23	PfkB	17	324	1.60E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00847	E2.7.1.4, scrK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016773	Molecular Function	phosphotransferase activity, alcohol group as acceptor
GO:0016301	Molecular Function	kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.070
SRP064423	SRR2545915	Juvenile tuber	4.840
SRP108465	SRR5643513	five period of Gastrodia elata	11.170
	SRR5643514	five period of Gastrodia elata	12.220
	SRR5643515	five period of Gastrodia elata	9.640
	SRR5643524	five period of Gastrodia elata	9.270
	SRR5643525	five period of Gastrodia elata	8.850
	SRR5643528	five period of Gastrodia elata	8.480
	SRR5643658	five period of Gastrodia elata	6.530
	SRR5643659	five period of Gastrodia elata	14.020
	SRR5643660	five period of Gastrodia elata	13.040
	SRR5643661	five period of Gastrodia elata	13.750
	SRR5643662	five period of Gastrodia elata	7.220
	SRR5643663	five period of Gastrodia elata	12.940
	SRR5643664	five period of Gastrodia elata	10.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.280
SRP279888	Gastro	Gastrodia elata tuber	6.55
	Juven	Juvenile tuber	13.72
	Mother_Gastro	Mother tuber of Gastrodia elata	22.05
	Mother_Juven	Mother tuber of Juvenile	20.40