Detail information of GWHGAAEX007525/evm.TU.scaffold_2.394
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428306733|ref|YP_007143558.1| | 1.00E-30 | (myosin heavy-chain) kinase [Crinalium epipsammum PCC 9333] |
| KOG | KOG0305 | 0 | Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits |
| nr | gi|672120378|ref|XP_008783451.1| | 0 | PREDICTED: protein FIZZY-RELATED 1-like [Phoenix dactylifera] |
| Swissprot | tr|Q8L3Z8|FZR2_ARATH | 0 | Protein FIZZY-RELATED 2 |
| trEMBL | tr|M5WFD3|M5WFD3_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ12439.1} |
| TAIR | AT4G22910 | 0 | FIZZY-related 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 14521601 | 14525732 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007525
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 306 | 342 | 1.40E-06 |
| PF00400.31 | WD40 | 347 | 387 | 0.0057 |
| PF00400.31 | WD40 | 436 | 472 | 2.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03364 | CDH1 | Ubiquitin mediated proteolysis | map04120 |
| Cell cycle | map04110 | ||
| Cell cycle - yeast | map04111 | ||
| Progesterone-mediated oocyte maturation | map04914 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.320 |
| SRR2545915 | Juvenile tuber | 37.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.840 |
| SRR5643514 | five period of Gastrodia elata | 44.450 | |
| SRR5643515 | five period of Gastrodia elata | 51.160 | |
| SRR5643524 | five period of Gastrodia elata | 44.270 | |
| SRR5643525 | five period of Gastrodia elata | 49.100 | |
| SRR5643528 | five period of Gastrodia elata | 45.360 | |
| SRR5643658 | five period of Gastrodia elata | 49.410 | |
| SRR5643659 | five period of Gastrodia elata | 74.790 | |
| SRR5643660 | five period of Gastrodia elata | 65.450 | |
| SRR5643661 | five period of Gastrodia elata | 76.870 | |
| SRR5643662 | five period of Gastrodia elata | 76.360 | |
| SRR5643663 | five period of Gastrodia elata | 85.620 | |
| SRR5643664 | five period of Gastrodia elata | 154.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 53.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 63.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 54.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 47.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 39.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 50.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 54.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 54.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.05 |
| Juven | Juvenile tuber | 39.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.01 | |
| Mother_Juven | Mother tuber of Juvenile | 35.50 |