Gene detail

Detail information of GWHGAAEX007529/evm.TU.scaffold_2.399

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0773	5.00E-117	Transcription factor MEIS1 and related HOX domain proteins
nr	gi\|672120361\|ref\|XP_008783445.1\|	2.69E-180	PREDICTED: homeobox protein BEL1 homolog [Phoenix dactylifera]
Swissprot	tr\|Q38897\|BEL1_ARATH	1.00E-117	Homeobox protein BEL1 homolog
trEMBL	tr\|A0A061G6K4\|A0A061G6K4_THECC	1.00E-162	POX family protein isoform 1 {ECO:0000313\|EMBL:EOY24827.1}
TAIR	AT5G41410	5.00E-117	POX (plant homeobox) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	14647529	14654637	+

Transcript Sequence
>GWHTAAEX007529 ATCTGCTACTACTGGTGGAATATTTTCCACTTGTAAAACTATAGTCACTGTAAGGCGGTCTTCACTACCTTCTTCCATTACTCTTTCTCTCAGTCTCTGATCAACGCCATGATCCAAATCCCTCTGAAAATTAAACCCCTTCGGCGGGCTTCTGTCTTCATCTGATCCACAGCCGCAGAGAGCAGCAGCAGAGGCCAGCCAAAAATAGCTTTTGGCAGGCCGAAACAGAGAAGGGAACAGAGTGAGAGACAGAGAGAAAGAGGGAGAAACGTGGGCCGAGGATTCTCGTCCCAACAACCCCCCGAGACTCAATCAGATGAGAGAGATCCCCCGCACGAAAAACAGCATTGATTGCAATTATTCAAAGCTCTGCTGACCTTCCGCCCCCCATGGCTGCGCGCTTCCTTTCGATCCCTTCATCTCTCTATCTCCATCCCCTTTCCTTATTCCTTTGAAACCGTACTTCAACCCACGCCCCCCAAAGCTCCCATCTTTTTTGCTCCTCCTTCATCAAGTTCGCTTCTCTCGGATGGCTCAGGAGCATCCGCATCAGGCAACCCTGGGGGAATACGGCGAGTTCTCAATTCAGGGATATCATCAGGCTGCCGCGGCAGCCGCAGGCGGCGGCGGCGGCGGCCATGAGCTGTACAGTTTGCAATCGAGGATGGAGATGCTGGAGCTTCCCGCTAAGCATCATCATCAGCATCCGAGCCATCATAATTCTGAAGCTTCGTGGGGTTTTCATCATCTTCATCATCATCATCATCATCATCATAATCCGGAAACATCATCATCATCTTTTGTTGACGATTCCCTTAGATGCCTATTCCCTGTGCACGAAGAAGGGGAGGAGCAACCAAGTCAGGGCCTTTCTCTGTCCCTTTACAACCCCGATCCTTCTGTTGCAGATTACCAACGTTCTATACTCTTCTCAAGACAGGGGAGCAGCAACAGCACTGTTTCTCTTCATCAAGGCGTCTCCTTTCATGGAGAGGCGGCAGCTGCCAGCACTTACCACAAGCTGAGGCTGTCCAAGTACTTGATTCCCGCCCAGGAATTGCTCAACGAGTTCTGTTTTCTAGGAGGAGGACCCAAAGCCGCGGTTTTGAAGCAGAACCAACAGAGCAGAAGGACCGAAGAAGGGGCCTCTCCTGTCAGCAGCCACTCCTCCCTCCATAGCCTCGACATTCTCGAGCTGCAGAAGCGGAAGGCAAAGCTTCTGAATCTTCTCGAAGAGGTGGACAGGAGGTACAGGAGATACTGCGAGCAGATGCGGGCGGTGGTGTCGTCGTTCGAGGCGGTGGCGGGGGAAGGGGCGGCGACGGCGTATTTGGCTCTGGCGTCGAGGGCGATGTCTCGGCACTTCCGGACTCTGAGGGACGGGATAGCGAACCAGGTGCAGGCGGCGAAAAAGGCGGTGGGGGAGAAGGACTCGATAGCGCCGGGGATAAGCAGGGGGGAGACGCCGAGGCTCAAGGTGCTGGACCAGTGCTTCCGCCAGCACAAGGCCTTCCAGCACGGCGCTGGCGGAATGCTGCCTGACAACCACCCCTGGCGCCCCCAGCGCGGCCTCCCAGAGCGCTCTGTCTCCATCCTCCGCGCCTGGCTCTTCGAGCATTTCCTTCACCCGTACCCGAGCGACGTCGATAAGCACATTCTGGCGAGGCAAACCGGCCTCTCTCGAAGCCAAGTTTCCAATTGGTTCATCAACGCGAGGGTTCGGCTCTGGAAACCGATGATCGAAGAGATGTACACTGAGGAACTAAAAGAGCATGAACTCCAATCGTGCACGGCGGCCAGGGGGCAGCCAGATGACCCAAGCTGCTCCCGCGATCACGCCGCCGCCGCCGCCGAAGATCAGAAGCCACTTCCCGCGAGACTTCTGGCGGAGCCGGACTCCCTCTCCTCGGTAGTCAACCAGCGCTCGGAGCCCAGATCCCATCACTCAAACCCGCTGCAAAGAGCGGAGAACTACGGCATTGCGGACATCGACTTTTCCTCCTACGGCGGATGCGGCGGCGGCGGCGCCGTCTCCCTCACCTTGGGGCTGCACCATCCCGACGGCGGCGCGATGGGCTTCTCTGTTACTCCGGCGAGTCAGGAGCCGCCTCCTTTGTTCTACACCAGAGGGCAGATGGAGGAGTACCAGCCAGTGCAGTTCTCCCTTCTTGATGGGGAGGTTCAGAACCTTCCTTACAGGAACTTAATGGGCGCTCAGCTGCTGCATGACTTGGCTGGATGAACCTCCTGAGTGAATTTCAGTGACAGATAAGTGTGTTCTTTATTCCTTCATGCTGATTCTTGAACAATGGAATATATTTATACGAGGTTTTAGGAAAAGTTGGGGTGGTTTTTGCTTTGGAGTGATTGAACTAAGAGGGTTATTGAGTAGGTTCACTGGTCAAAAACCCATCATAGCTTCCCTTTTTGATCTTGTGAACCATGTCTATGGACTTTGATGGGTTTTTGACCGGGAGAACTTTGAGGACATTCTCTCCTTCAATTTTTTATTGAAGCCTTGTGTCTATATAAATGTATGTAGAGCTTTAATTGATATGACTACTTGCTTGTGAAATGTATGATTTGCATTTGAAAATTGGCAGCTCTCTCTCCCAACAGTGCAC

Network for GWHGAAEX007529

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07526.10	POX	165	287	4.10E-41
PF05920.10	Homeobox_KN	359	398	7.60E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-BELL

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.990
SRP064423	SRR2545915	Juvenile tuber	6.260
SRP108465	SRR5643513	five period of Gastrodia elata	28.220
	SRR5643514	five period of Gastrodia elata	26.560
	SRR5643515	five period of Gastrodia elata	20.550
	SRR5643524	five period of Gastrodia elata	24.660
	SRR5643525	five period of Gastrodia elata	22.610
	SRR5643528	five period of Gastrodia elata	16.340
	SRR5643658	five period of Gastrodia elata	10.090
	SRR5643659	five period of Gastrodia elata	39.900
	SRR5643660	five period of Gastrodia elata	57.090
	SRR5643661	five period of Gastrodia elata	52.420
	SRR5643662	five period of Gastrodia elata	42.630
	SRR5643663	five period of Gastrodia elata	41.320
	SRR5643664	five period of Gastrodia elata	44.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.410
SRP279888	Gastro	Gastrodia elata tuber	30.56
	Juven	Juvenile tuber	56.65
	Mother_Gastro	Mother tuber of Gastrodia elata	52.26
	Mother_Juven	Mother tuber of Juvenile	39.61