Gene detail

Detail information of GWHGAAEX007532/evm.TU.scaffold_2.402

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|209964506\|ref\|YP_002297421.1\|	5.00E-83	lipid-A-disaccharide synthase [Rhodospirillum centenum SW]
nr	gi\|695058765\|ref\|XP_009417708.1\|	0	PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Musa acuminata subsp. malaccensis]
Swissprot	tr\|F4IF99\|LPXB_ARATH	2.00E-152	Probable lipid-A-disaccharide synthase, mitochondrial (Precursor)
trEMBL	tr\|W9SCL5\|W9SCL5_9ROSA	2.00E-175	Lipid-A-disaccharide synthase {ECO:0000313\|EMBL:EXC25531.1}
TAIR	AT2G04560	4.00E-51	transferases, transferring glycosyl groups

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	14720845	14734341	+

Transcript Sequence
>GWHTAAEX007532 AAAAAGGCGCCTAAACCTAAAATAGTCCCGGAAGATGCTACAAATGCCGTTACGCGGGGTCGCCGCAACTTGCTTCTGCTGGAGGATCGGTAAGGCGAGGTCTGTGACGACCTTCAATAGACGAGTCGTCGATATGGCATCTCGAGATGGCGAGCTGAGAGTATTCATAGTCGCTGGTGAGGTCTCGGGTGACTCCATTGCTTCTCGCCTCATGGCTTCCCTCAGGAGAATCTCCCCATTTCAGCCTCGTTTTTCCGGAGTCGGAGGAGCTTTAATGCAGCATGAAGGCCTTCAATCTCTCTTTCCTATGGAAGACATTTCAGTCATGGGCATCTTTGAATTGCTTCCTCACCTAAACACGATACGAATAAGGTTAAAAGAAACCATTGAAGCAGCTATGCTATTCAAGCCTCATGTGGTGGTGACAATTGATTCAAAGGGTTTCTCTTTTCGTTTATTGAAGCACTTGAAAGCTAGATATACTGAGGAAGAGAATCGTCCAATATGTGTCCATTATATTGCACCATCATTCTGGGCATGGAAAGGAGGTGAACAAAGACTTGGAAAACTATCTGAATTTATTGACTATATGCTATGCATACTTCCTTTTGAAGAAGAAATTTGCAGATTAAATGGACTCGCTGCATCATATGTTGGTCATCCCACATTGGAAGATGCTCTTTGCTTGAACATGGGGCTTGACTCGCCATCGTGTAATTGGAGGTTTCGAGGAAACGGTGATGCTTTTCGACAACAACATGGAATTGCTCCTGGAAACGTTGTCATCACATTGCTTCCCGGAAGTAGGTTGCAAGAAGTTAAGCGTATGCTACCAATATTTTTGAAAACTATGGAATTGTTAAATGGCTCTTGTACTGGATTGTCTGCAATTATTCCTGTTGCGCCTCATCAGCATGTGGCCTCTCACATTAAAAAGGAGATTCCTTCTTGGCCCATATCAACCATTTTGATTCCTGGAATGTCGCTCTTGCAAAGATATGAAGCTTTCAGTGCAAGTATAGCTGCATTGTGCACGTCTGGTTCTACTGTTATGGAATTGCTATTAGCAGGATTGCCCTCTGTTGTTGCATATCGTGCTCATTTTTTGACTGAATGGTTAATTCAATACATGACCAAGCTGCACTTTATTTCCCTTCCTAATATTCTTTTGAATTCAGAGGTTATTCCTGAACTTTTGTTTAGCTCTTGTACTTACAGGAACCTGGCAGAAACTCTCAGCAAAATAATTCGTGATGAAGAAGCTCAAATGAAGCAGATGGCTGCAGCTGACAAAGTCTTTAGACTGCTCTGCCCTCAGCGTGTGCATTCTCTCACAGACAACTGCCCCAGCATGAACGCGGCATCTATAATACTGAATATACCAAAGCTGAAGTGAGAGTTCGACAAAAGCAGAAGTGAGAGTTGTAGAAATTTGTATTTTCCTTTTTTATCAAGTTGTATCAATGATGGTTTTTATCTACAAGTCATTGTTGACTTCAAAATATTATGCTCTTTCAAATAAATGGAAGGTAACCAGGAGCTCATCTATGCATAAGGAACATAGCTATGCTTATGATGTAAAACATTTTTTTAAATATAATGGGAAGCACAACGATAATCACATCACATCACATTAA

Network for GWHGAAEX007532

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02684.14	LpxB	43	425	2.10E-76

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT19

KEGG pathway

KO	Enzyme	pathway	mapID
K00748	lpxB	Metabolic pathways	map01100
K00748	lpxB	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name
GO:0009245	Biological Process	lipid A biosynthetic process
GO:0008915	Molecular Function	lipid-A-disaccharide synthase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.210
SRP064423	SRR2545915	Juvenile tuber	10.560
SRP108465	SRR5643513	five period of Gastrodia elata	6.580
	SRR5643514	five period of Gastrodia elata	7.240
	SRR5643515	five period of Gastrodia elata	5.580
	SRR5643524	five period of Gastrodia elata	6.860
	SRR5643525	five period of Gastrodia elata	4.440
	SRR5643528	five period of Gastrodia elata	3.350
	SRR5643658	five period of Gastrodia elata	3.530
	SRR5643659	five period of Gastrodia elata	6.400
	SRR5643660	five period of Gastrodia elata	5.290
	SRR5643661	five period of Gastrodia elata	5.030
	SRR5643662	five period of Gastrodia elata	3.300
	SRR5643663	five period of Gastrodia elata	3.410
	SRR5643664	five period of Gastrodia elata	3.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.940
SRP279888	Gastro	Gastrodia elata tuber	12.76
	Juven	Juvenile tuber	10.20
	Mother_Gastro	Mother tuber of Gastrodia elata	10.17
	Mother_Juven	Mother tuber of Juvenile	8.85