Detail information of GWHGAAEX007536/evm.TU.scaffold_2.406


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17241.00E-79SCF ubiquitin ligase, Skp1 component
nrgi|694997836|ref|XP_009401439.1|3.09E-88PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FHW7|SKP1B_ARATH3.00E-80SKP1-like protein 1B
trEMBLtr|M8CK38|M8CK38_AEGTA1.00E-84SKP1-like protein 1A {ECO:0000313|EMBL:EMT23721.1}
TAIRAT5G421901.00E-79E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101482378914834061+
Transcript Sequence

Network for GWHGAAEX007536

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03931.14Skp1_POZ7662.10E-28
PF01466.18Skp11151624.90E-31
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilySKP1

KEGG pathway

KO Enzyme pathway mapID
K03094SKP1, CBF3D Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
Wnt signaling pathwaymap04310
Hedgehog signaling pathway - flymap04341
TGF-beta signaling pathwaymap04350
Cell cyclemap04110
Cell cycle - yeastmap04111
Oocyte meiosismap04114
Circadian rhythmmap04710

Gene Ontology

GO term OntologyName
GO:0006511Biological Processubiquitin-dependent protein catabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms310.440
SRR2545915Juvenile tuber297.130
SRP108465SRR5643513five period of Gastrodia elata419.080
SRR5643514five period of Gastrodia elata441.820
SRR5643515five period of Gastrodia elata396.180
SRR5643524five period of Gastrodia elata433.500
SRR5643525five period of Gastrodia elata549.510
SRR5643528five period of Gastrodia elata577.490
SRR5643658five period of Gastrodia elata476.200
SRR5643659five period of Gastrodia elata437.820
SRR5643660five period of Gastrodia elata426.030
SRR5643661five period of Gastrodia elata429.720
SRR5643662five period of Gastrodia elata427.680
SRR5643663five period of Gastrodia elata415.670
SRR5643664five period of Gastrodia elata426.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1268.340
SRR6049655Rhizomagastrodiae_C368-T10_good_1236.450
SRR6049656Rhizomagastrodiae_C368-T07_good_1290.570
SRR6049657Rhizomagastrodiae_C368-T07_good_1281.300
SRR6049658Rhizomagastrodiae_C368-T04_good_1286.980
SRR6049659Rhizomagastrodiae_C368-T04_good_1296.980
SRR6049660Rhizomagastrodiae_C368-T01_good_1267.420
SRR6049661Rhizomagastrodiae_C368-T04_good_1282.810
SRR6049662Rhizomagastrodiae_C368-T01_good_1315.490
SRR6049663Rhizomagastrodiae_C368-T01_good_1316.800
SRR6049664Rhizomagastrodiae_C368-T10_good_1416.210
SRR6049665Rhizomagastrodiae_C368-T10_good_1416.210
SRP279888GastroGastrodia elata tuber 487.54
JuvenJuvenile tuber491.95
Mother_GastroMother tuber of Gastrodia elata 439.62
Mother_JuvenMother tuber of Juvenile 435.85