Detail information of GWHGAAEX007537/evm.TU.scaffold_2.407
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|170781032|ref|YP_001709364.1| | 9.00E-90 | peptidase [Clavibacter michiganensis subsp. sepedonicus] |
| nr | gi|672160788|ref|XP_008800183.1| | 0 | PREDICTED: subtilisin-like protease SBT5.3 [Phoenix dactylifera] |
| Swissprot | tr|Q9LNU1|CRSP_ARATH | 0 | CO(2)-response secreted protease {ECO:0000303|PubMed:25043023} (Precursor) |
| trEMBL | tr|I1GMZ8|I1GMZ8_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G07700.1} |
| TAIR | AT1G20160 | 0 | Subtilisin-like serine endopeptidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 14835910 | 14840549 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007537
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 33 | 110 | 2.10E-11 |
| PF00082.21 | Peptidase_S8 | 144 | 595 | 5.00E-48 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.090 |
| SRR2545915 | Juvenile tuber | 1.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.990 |
| SRR5643514 | five period of Gastrodia elata | 2.980 | |
| SRR5643515 | five period of Gastrodia elata | 2.140 | |
| SRR5643524 | five period of Gastrodia elata | 2.050 | |
| SRR5643525 | five period of Gastrodia elata | 6.720 | |
| SRR5643528 | five period of Gastrodia elata | 1.460 | |
| SRR5643658 | five period of Gastrodia elata | 2.990 | |
| SRR5643659 | five period of Gastrodia elata | 2.090 | |
| SRR5643660 | five period of Gastrodia elata | 0.280 | |
| SRR5643661 | five period of Gastrodia elata | 0.260 | |
| SRR5643662 | five period of Gastrodia elata | 0.050 | |
| SRR5643663 | five period of Gastrodia elata | 1.440 | |
| SRR5643664 | five period of Gastrodia elata | 0.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.170 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.600 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.50 |
| Juven | Juvenile tuber | 0.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.28 | |
| Mother_Juven | Mother tuber of Juvenile | 0.21 |