Gene detail

Detail information of GWHGAAEX007540/evm.TU.scaffold_2.410

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672181434\|ref\|XP_008810934.1\|	6.17E-95	PREDICTED: F-box protein At5g52880 [Phoenix dactylifera]
Swissprot	tr\|Q9FLX3\|FB293_ARATH	4.00E-54	F-box protein At5g52880
trEMBL	tr\|E0CUQ7\|E0CUQ7_VITVI	2.00E-76	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22607.3}
TAIR	AT5G52880	1.00E-53	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	14879085	14937126	-

Transcript Sequence
>GWHTAAEX007540 AAATTATTTTCTTAACAGCATAAGTAATTTGTTTTCAAACCAGGTTAAAGAGCTAATGTGAATCAGCTATGCCCTATTCCATCGAGGAAGGGATCGACGACGTACTTCCTTCGCCGGTGGAAAGATATGAGCATTTAGGGTTGGCCGATGCCCTCTCCCGGCCTTACGATTATTTATCCTCCTGTAAGGAGCTGGCCCTCATCCTCAGACGCGCCTACGCGAAGCTTCCCAAGAATGTTCAATCCCTCGTTGTCAGGGACACTCTCTCCGCTTTCCGTCTTCTTCCCAATGTACAACAAACTATTGGAATTCCAGCAGCAAATCTTCTTGTCAAGGCTGCCGAAGCTGCATTGCCCAAGCAGAAGAAAACGCTTGTGTCCTCTGAGTTTAAGCATGCTGTGGTTGCACAGAGGCGGCATGCTAAAACTGATCAACAAGAAGTATATTTACTAGGTTATACGCACCTACCACAGGATATCCTTCTCCATATTTTCAGATTGCTGGACCTGAGTTCTTTGGTCAATGCTAGCTCAGTTTGCTGGGCGTGGAATACTGCTGCTAAAGAAAAAAGGCTATGGATGTCCCATTATTCCAATCTATTTGGCAAGTTAGATATTACTGTTGAAAAAAAATCTGGCTATCATGCTGATGACAGTGGTGATACTGTTATTGTTAAAGAAGACAACGGTGCATTAATTAATATTGATTGGAGGGAGGCTTTTAAAAGAAAGTTCATTGGACACTCAGCTTGGAGATATAAGCCGCATCGAGCAGTTTGTATGCACTGTGAATCAATAATCTGGCTCAACAAGATAACATGTGATAGACCTCACCGTTGCTGTAAAAGTGAGCAAGGCAGGTTAAAACTCAGGCCCATTTCAGCTCATATGCTTGTAAATTATTTACTGGTGGGCATGAATGGCAACTGCAAGAGTGGCGGGAATAACTACTTTACTTTCTCATCCTCTGAGAGTGATGACAGTGGCTGTGATGAATCATCATTCCCAAAATTGTATTCCAAGCTGTGGGCCTTGCCGAGGCTGAGTTAAATTACTAGTGGCTCAACCTTTCGGCTCTCATGGTTGACCCTCAATCACTTGGAGCTTTTATATTCTCCCATGGCCTACTCCATGGCCACTCTAATGAGCTCAAGACTTCATCGCGTTCAGTTCCAGCTCACTCCAGTGCCATTGGCTGCATGTCTCGGTGTACCCGACCTAGGTTCACCATCTCATGTTGCACTCAAGGTTCCACCAAACTTAATATTGTAGGGTGTTGAAAGTAGGTTCACATGAAAGAGGTGAGTTCATGGTGTTGGTAGTTGGCTCATGGTCCGCTGTTTTTATCTTATTCCACACAATATCTTAAAATAAATGTCTTTCTTTAAAATATAACCTCGTTGCATGGTTATACTGAGACCCGATGCATCACTTCGACAAAAAGTGCAACCAACATTGCCTATCTATTGATTAAACACTGTCAAAATTCACAATCTCCCCACTTTATTGATACTCTATTCTCGAGCGGCATCAGCCCATAAAGCTTTCCTATGTTTTATATTTTATGAATATTCTACACTATAAAAGAAATTGTAATGCTCTTTCTAATGGCTTTCAAAATAATACTTTGGTGCTAAAGCTTTGTTTTGAAAGAAGTTTTTGGTAATGAGAAATGCTTCGGTGTTCTTTTCATAGTTATAGTTCTTTTTTCCAGGCAATTTAATATCTTTAATCCATTTATAATCATGATTTTGACTAAGTTTAACACTATTTAGATACATTAATTGTGCTGCAAGTGTGAATAGAGCGTACCAAAATTCTTTTGTATTATTATGTTTAGGTGGATAGGCAGTTATAAAACTTCCTATTGATGGGTTTTTTAATGGGATGTCTCTACATAACACTAATGATCAATTGTTTTT

Network for GWHGAAEX007540

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	132	171	3.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.530
SRP064423	SRR2545915	Juvenile tuber	3.020
SRP108465	SRR5643513	five period of Gastrodia elata	2.390
	SRR5643514	five period of Gastrodia elata	2.980
	SRR5643515	five period of Gastrodia elata	2.650
	SRR5643524	five period of Gastrodia elata	3.290
	SRR5643525	five period of Gastrodia elata	3.640
	SRR5643528	five period of Gastrodia elata	4.570
	SRR5643658	five period of Gastrodia elata	4.100
	SRR5643659	five period of Gastrodia elata	2.260
	SRR5643660	five period of Gastrodia elata	2.200
	SRR5643661	five period of Gastrodia elata	1.460
	SRR5643662	five period of Gastrodia elata	2.160
	SRR5643663	five period of Gastrodia elata	2.080
	SRR5643664	five period of Gastrodia elata	1.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.440
SRP279888	Gastro	Gastrodia elata tuber	6.53
	Juven	Juvenile tuber	2.39
	Mother_Gastro	Mother tuber of Gastrodia elata	7.84
	Mother_Juven	Mother tuber of Juvenile	5.11